Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e23
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.72 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.9  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 382 HSLTGPSKIVSCIYFFFCSYVFIG 311
           +S TGPS  V C  FF+  Y  +G
Sbjct: 186 YSETGPSHCVVCQNFFYQIYATLG 209


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 RITKNLNKSSPQPTFATSKLPKIVKPP 298
           +I +N  + +P P   T+K P+++ PP
Sbjct: 175 QIRRN-ERRTPDPHDETAKKPRVLSPP 200


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 636 FSRFVFLFKFLRSLRHAFV 580
           FSR V  F+F R + H  +
Sbjct: 186 FSRLVVFFRFERQIGHHLI 204


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 162 FNLSKTSAITHNILINLVHLKLT 94
           F  SK + ITHNIL  +    +T
Sbjct: 25  FAPSKNTTITHNILRGMQFTDIT 47


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 250 PTNICNKQATEDRE 291
           PT++C+   +ED+E
Sbjct: 601 PTSVCSSPRSEDKE 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,987
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)