Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e21
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.63 
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    28   1.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    26   5.9  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 198 DFIVAPLTESLSPSFISCIDPDL---PTIAYTFGFRGRVKGPATTAVLSA 338
           DF+  P+ E++  SFI+   PD+   P I+     +G + G     +L A
Sbjct: 632 DFVSTPIKENVDSSFINMTPPDVSHAPLISRIIPNKGSIMGGYEVTILGA 681


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 318 TTAVLSAYLATKKRNVLLLDWEEEAQSGLLGLPLS--YALYAV 440
           T+AVL   L   ++ +++L W   A   L GLPL   Y L +V
Sbjct: 223 TSAVLQVALNRNRKGLVILAWGTPAAKRLQGLPLKAHYVLRSV 265


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 234 PSFISCIDPDLPTIAYTFGFRGRVKGPATTAVLSAYLA 347
           P   S +DP LP I     + G + GP    +  + LA
Sbjct: 826 PGITSWLDPSLPVIVLIANYLGLMDGPFWNTIRGSGLA 863


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 614 SSYPCNCITLFSSLFSSVTHHVSP 543
           ++ PC  +T ++ LF S  H V P
Sbjct: 142 ATLPCAAVTAWNGLFGSKEHQVKP 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,630
Number of Sequences: 5004
Number of extensions: 53150
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)