Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e21
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0348 + 2739523-2741006,2742046-2742232 30 1.5
07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108 30 2.0
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 2.6
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 29 2.6
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 29 4.6
09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639... 28 6.0
07_03_1157 - 24419157-24419948 28 8.0
02_02_0524 + 11179224-11179469,11179543-11181465 28 8.0
>03_01_0348 + 2739523-2741006,2742046-2742232
Length = 556
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 477 RRPSAFLSVLL*AQHIKHSSKAIPIVRSEPPLPSPTIRHFSS*WLSKPTIPP 322
R P + L L ++ + + +P++R PP P P + F++ L+ P PP
Sbjct: 3 RLPKSLLLASLSKPFLRRNREPLPLLRP-PPRPLPRVLPFAARTLAAPAAPP 53
>07_03_0671 - 20571512-20571876,20571902-20572581,20573011-20573108
Length = 380
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 474 DALVRLSGAGINMTSIHLVGHSLGAHMMGYAGKQAREKGYTV 599
D + L G N ++ L GHSLGA G+ EKG+ +
Sbjct: 162 DEVEGLLQGGANSCTMWLAGHSLGASQALDVGRSMAEKGFNL 203
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 541 RECPTKCMLVMLIPAPDSLTRASPICFPICI 449
+EC CM +++ D L R P C PI +
Sbjct: 558 KECAISCMSLVVFTFGDGLQRELPACLPILV 588
>01_05_0687 +
24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 396 SEPPLPSPTIRHFSS*WLSKPTIPP 322
S P P P +F S WL PT PP
Sbjct: 840 SSPNTPPPGFENFKSSWLPLPTTPP 864
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 541 RECPTKCMLVMLIPAPDSLTRASPICFPICI 449
+EC CM + L D L R P C P+ +
Sbjct: 421 KECAISCMSLALSTFGDGLQRELPACLPVLV 451
>09_06_0086 -
20763085-20763162,20763233-20763286,20763287-20763975,
20764173-20764324,20764404-20764604,20764920-20765064,
20765552-20765588,20765880-20765965,20766093-20766329,
20766501-20766609,20767025-20767135
Length = 632
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 342 LATKKRNVLLLDWEEEAQSGLLGLPLSYALY--AVPKAIQIGKQMGDALVRLSGAGINMT 515
L+T K N L+W+ Q + LPL + +P++++ G +G + A +
Sbjct: 534 LSTDKCNEATLEWQRIQQRMKMTLPLCKGHHEPCIPRSVKKGSNIGRLFYVCARAQVFNF 593
Query: 516 SIHLVGHSLGAHMMGYAGKQAREKGY 593
I+ H G + G A Q G+
Sbjct: 594 RINCSIHIRGTIIKGPASNQEANCGH 619
>07_03_1157 - 24419157-24419948
Length = 263
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 429 KHSSKAIPIVRSEPPLPSPTIRHFSS*WLSKPTIPP 322
KH P+V P LP P + H + L KP +PP
Sbjct: 164 KHEEPPHPVV---PELPKPEVPHAAVPELPKPELPP 196
>02_02_0524 + 11179224-11179469,11179543-11181465
Length = 722
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 225 SLSPSFISCIDPDLPTIAYTF-GFRGRVKGPATTAVLSAYLATKKR 359
+L+ + S D DLP+ A + G RG+ KGP ++L + +K R
Sbjct: 643 ALASTSRSAADYDLPSPAVSRRGRRGKTKGPTLASMLKKKVTSKDR 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,587
Number of Sequences: 37544
Number of extensions: 388786
Number of successful extensions: 1003
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -