Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e20
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 173 1e-43
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 173 1e-43
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 83 3e-16
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 60 2e-09
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical pr... 28 6.1
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 28 6.1
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 28 6.1
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 28 6.1
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 8.0
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 8.0
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 8.0
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 173 bits (421), Expect = 1e-43
Identities = 84/205 (40%), Positives = 132/205 (64%), Gaps = 2/205 (0%)
Frame = +3
Query: 129 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 305
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 306 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 485
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 486 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 662
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 663 KDVFISAAERDIYTGDSIYILIITA 737
KD F AAER+I TGD I+++I A
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEA 244
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 173 bits (421), Expect = 1e-43
Identities = 84/205 (40%), Positives = 132/205 (64%), Gaps = 2/205 (0%)
Frame = +3
Query: 129 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 305
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 306 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 485
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 486 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LPREKALALL 662
GKG V+SYDPIG R + A G+A + P LD QIG + E P L ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 663 KDVFISAAERDIYTGDSIYILIITA 737
KD F AAER+I TGD I+++I A
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEA 244
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 82.6 bits (195), Expect = 3e-16
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 1/192 (0%)
Frame = +3
Query: 162 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 341
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 342 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 521
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 522 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 698
A +F A G+ L + +N +NM+ P E A + + +S ERD
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN-FWRENMK-------PDELFEATAQSI-LSCLERDA 178
Query: 699 YTGDSIYILIIT 734
+G + IT
Sbjct: 179 ASGWGAVVYTIT 190
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 60.1 bits (139), Expect = 2e-09
Identities = 49/194 (25%), Positives = 88/194 (45%)
Frame = +3
Query: 162 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 341
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 342 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 521
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 522 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 701
+R A GS + +Q LD+Q L E+ A++K A RD
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 702 TGDSIYILIITASG 743
+G + + +I +G
Sbjct: 193 SGGVVRLAVINKAG 206
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 47.2 bits (107), Expect = 1e-05
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 1/194 (0%)
Frame = +3
Query: 162 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 341
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 342 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 518
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 519 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDI 698
G F A GS + +L+ + + +++A L++ + D
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDF---------KVDMTKDEAEKLVQRALEAGMHGDN 213
Query: 699 YTGDSIYILIITAS 740
+G+S+ ++II S
Sbjct: 214 ASGNSLNLVIIEPS 227
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 7e-05
Identities = 31/130 (23%), Positives = 56/130 (43%)
Frame = +3
Query: 201 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 380
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 381 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 560
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 561 AAQLQPLLDN 590
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -2
Query: 643 SLGKGASVTFCIFFKPI*LSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLS 476
+L + A+ I + LS G AAA PPA G +Y H +PSL
Sbjct: 206 TLSRWAAFILMISLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLI 262
Query: 475 KPANTLDT*YGKNRL*YNIV 416
P T D +GK L Y +V
Sbjct: 263 TPMRTKDNVFGKIALVYGVV 282
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 418 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 257
V SI + V+ L+ S + ++ C ++ + V + + N VL +N FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275
Query: 256 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 152
L++++ P V PI S + +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310
>Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical
protein R04D3.7 protein.
Length = 320
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 69 KSYKMLSVNENFPEYAVPGAKQHRFEPYADNG 164
KSY+ S+N+N EY+V G + F P + NG
Sbjct: 159 KSYE--SINKNLEEYSVIGIMNYSFLPSSING 188
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform a
protein.
Length = 984
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 573 QPLLDNQIGLKNMQNVTEAPLPREKAL 653
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 573 QPLLDNQIGLKNMQNVTEAPLPREKAL 653
+P D Q+G +QN+ E LPR KAL
Sbjct: 808 EPAFD-QLGSSRLQNILEMDLPRPKAL 833
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 506 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFA*GKGP 652
LRP+ C P L ++ RC + A R ++ EY C RS + G P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 243 YTRDQKKLFKLSESTVLGATGCW 311
YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 243 YTRDQKKLFKLSESTVLGATGCW 311
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 243 YTRDQKKLFKLSESTVLGATGCW 311
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,618
Number of Sequences: 27780
Number of extensions: 392659
Number of successful extensions: 1206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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