Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e19
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    71   2e-13
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   3.3  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   3.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   10.0 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   10.0 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   10.0 

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +2

Query: 413 RLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFIFCLFG 586
           RLLVGLRW N    +G+S W+FE+      RN  + + FW  L L P +W    I  +  
Sbjct: 99  RLLVGLRWRNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGIVAIIR 158

Query: 587 LKFKWMLLVLIALTLTGANLYGYIKC 664
            +F W+ LV +A+ LT  N   Y +C
Sbjct: 159 FEFLWLALVAVAIGLTSVNTAAYSRC 184


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 334 NSATVPLLDDDTIAFGEEDNANKQFVSVTSWTEVVEL 444
           NS  V L D   I   +ED+  K  VS TSW EV+ +
Sbjct: 369 NSLFVVLTDAVIIVHVQEDD--KDIVSRTSWEEVIRM 403


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 182 NFQDYLLFLFNSICLTAVEIIHQYLSTY 265
           NF+  L   F SIC+  + + ++YL+ Y
Sbjct: 63  NFKSLLFLFFVSICVVILVVRYRYLNKY 90


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 624 KAINTRSIHLNLSPKRQNIKKVDQTKGHSVRPIQN 520
           K  N  S+ LN +PK   I  +D       +P+ N
Sbjct: 264 KEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSN 298


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 673  SELTLYVTVEISAC*SQGDQY*EHPLELESEK 578
            SE+   V + IS   S GD+   H L+++SEK
Sbjct: 1268 SEIADAVVLNISKLYSSGDKVRAHVLDVDSEK 1299


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 533 LTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTL 631
           L L  L+W+  + +CL  L F W++++    TL
Sbjct: 27  LILKVLLWTAPWYYCLTTLFFTWLIILYPRPTL 59


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -1

Query: 568 KESGPDQGAQRQAHPEQAALVPVDPALTGLEH 473
           K+  P        HP+Q  + P DPA+    H
Sbjct: 245 KDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRH 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,688
Number of Sequences: 5004
Number of extensions: 52959
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)