Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e19
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...    96   2e-20
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...    96   2e-20
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    28   5.3  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   7.0  
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming ...    27   9.2  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +2

Query: 413 RLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFG 586
           RLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +     
Sbjct: 82  RLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLT 141

Query: 587 LKFKWMLLVLIALTLTGANLYGYIKCKF 670
           LKF+WM++ L+   +  ANL+GY++C++
Sbjct: 142 LKFEWMIVALLGALMNMANLWGYLRCRW 169


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
 Frame = +2

Query: 413 RLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFIFCLFG 586
           RLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +     
Sbjct: 124 RLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLT 183

Query: 587 LKFKWMLLVLIALTLTGANLYGYIKCKF 670
           LKF+WM++ L+   +  ANL+GY++C++
Sbjct: 184 LKFEWMIVALLGALMNMANLWGYLRCRW 211


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 317 INNQYYLFHKFILNECQDR*IGIDELFQQQLNILN*IGIVGNPENSK 177
           I+N+  + HKF+ ++ + R   ++ L    L  L  + ++GN  NSK
Sbjct: 112 IDNEINVIHKFVRDKYEKRFPELETLVPNALTYLATVQLLGNEINSK 158


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 518 LFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKF 670
           +F +G +   + + T+ I     LKF W+LL +  L L    L+  IKC +
Sbjct: 2   IFIVGSSRQRICYPTYIIQNFELLKFPWLLLEISELFLFIITLFYSIKCSY 52


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 563 FFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKC 664
           FF+  L   KF   +    A+ L G N+ G +KC
Sbjct: 334 FFVMALTRSKFIAQIAYTGAIVLAGVNMIGVVKC 367


>AC084156-4|AAK68488.2|  251|Caenorhabditis elegans Transforming
           growth factor betafamily protein 3 protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 302 YLFHKFILNECQDR*IGIDELFQQQLNILN*IGIVGNPENSKGHTHNPN 156
           +LFHK++  +  D+ I I+       N++N + ++ N  N       PN
Sbjct: 99  HLFHKWMKQKSSDKMIKIEITNSNTQNVINALSVLRNAPNFDVMVFQPN 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,831
Number of Sequences: 27780
Number of extensions: 302218
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)