Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e15
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 64 9e-11
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867... 34 0.14
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 1.8
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 30 2.3
06_01_0772 + 5770502-5770619,5771035-5772335 28 7.2
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 28 7.2
01_06_0808 + 32134765-32136570 28 9.5
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 64.5 bits (150), Expect = 9e-11
Identities = 57/173 (32%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Frame = +2
Query: 278 VDGEKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDGPSPL----HLLKP--- 436
VD N QE V +T+ + Y C LP + SI + + + +KP
Sbjct: 53 VDAPFNPENGQESVPMTSHVGKHYTCFLPVEETKTMKSIIPQNATNVIIESERRVKPKDP 112
Query: 437 --LMN--KEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLG-YWSSEKQAKL 601
L+ K+ C YR E +WSYE C+ IRQ H EG+++ QEY LG Y + A
Sbjct: 113 DELLEILKDQCFYRHEGWWSYEFCYYGKIRQVHV--EGEKV-IQEYVLGEYDADATDAYY 169
Query: 602 EAEMK-AAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVC 757
E + +A E + T+K V L +GT+CDL PR T V +VC
Sbjct: 170 ENQTSDSADEDDNLIDTSKRYHVHL------YTNGTVCDLTDMPRETEVRFVC 216
>02_05_0083 +
25684816-25685383,25685474-25685499,25686325-25686718,
25687726-25687814,25687924-25687980,25688341-25688408,
25688511-25688617,25688698-25688768,25688844-25688912
Length = 482
Score = 33.9 bits (74), Expect = 0.14
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +2
Query: 392 IDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVC---HGRYIRQYHEE-----REGKQI 547
++D + + +K +++KE+ ++ E Y +Y H ++QY+E+ REG Q
Sbjct: 311 LEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFREGNQ- 369
Query: 548 NTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVE 661
EY LG K + A + + S +I K+ KVE
Sbjct: 370 KEVEYLLG---EGKHYYMMARLADEKSSAEIVKSKKVE 404
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 1.8
Identities = 30/110 (27%), Positives = 44/110 (40%)
Frame = +2
Query: 341 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQY 520
ES E LPE E S+DD + L+ L + S + E E CH +
Sbjct: 296 ESKESDLPETEQAEEASVDDQEA---LNQQPALETNDSLSVKAE-----ETCHQSNVATC 347
Query: 521 HEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVA 670
E+ T+E + + Q +E EMK A E+ +T + VA
Sbjct: 348 GEKTPEDDATTREPTVDTKEEQNQGSVE-EMKDA-EAVDTEETVQQSSVA 395
>10_08_0568 + 18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 341 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSY-RLESYWSYEVCHGRYIRQ 517
+ Y+ Q+ L S S I D P+P + ++NK++ Y +L + E + ++
Sbjct: 940 QCYQAQISTLASVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKK 999
Query: 518 YHE-EREGKQINTQEYFLGYWSSEKQAKLEAEMK 616
E +++ ++ + GY Q+K + +MK
Sbjct: 1000 RDEIQKQHDTLSQKMNASGYREKAPQSKQDEDMK 1033
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 179 YSCIGIEHDFKGFDDSILFGINWPGNPNLNENFVDG 286
Y C EHD+ G++ +I NW P L F G
Sbjct: 377 YICYLSEHDYSGWNGTITPFSNWSALPLLEIGFAGG 412
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 542 VCPLFLRDTAGYTFHGILHSSNSFPICMNTFLCSSKALEGEAVMDHRNH 396
VC L ++ G + HG + ++ FLCSS L+ EA M+ + H
Sbjct: 384 VCQLVMKPGEGISVHGSIPRNSRVDPWGGPFLCSSCQLKKEA-MEGKQH 431
>01_06_0808 + 32134765-32136570
Length = 601
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 308 QELVKVTTTNKESYECQLPELRSTESTSIDDYDGPS 415
+E V + T K+ E L RSTE S+DD+ S
Sbjct: 100 EEFVYLLTHYKQPIEQGLVSFRSTEDGSVDDFSSSS 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,042
Number of Sequences: 37544
Number of extensions: 359903
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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