Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e15
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical ... 101 6e-22
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021479-3|CAA16324.1| 279|Caenorhabditis elegans Hypothetical ... 29 3.7
Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical p... 29 4.9
Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical p... 29 4.9
Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical p... 29 4.9
L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy c... 28 6.4
L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated p... 28 6.4
AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy... 28 6.4
AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical ... 28 8.5
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 8.5
>AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical
protein Y105E8A.2 protein.
Length = 534
Score = 101 bits (242), Expect = 6e-22
Identities = 52/158 (32%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Frame = +2
Query: 293 NKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKE-MCSYRL 469
N + + V++ + N E + C+LP++ +++ Y G + LL+ ++ K+ MCSY +
Sbjct: 55 NTELSDDYVRIMSKNNERFLCKLPQIDVEVKKNVE-YSGATAGKLLETMLYKDKMCSYLI 113
Query: 470 ESYWSYEVCHGRYIRQYHEERE-GKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPK 646
+ YW+Y+VCHGRY+ QYHE++ Q++ E++LG + S A ++K P
Sbjct: 114 DVYWTYQVCHGRYVIQYHEDKMLTGQVSRTEFYLGNFDSALTASTNEQVK--------PA 165
Query: 647 TTKVEGVALPNVEIVMDDGTICDL-NGKPRLTRVHYVC 757
T ++E P + + GT CD+ GKPR T V Y+C
Sbjct: 166 TRRIENEDYPYYSVSYNHGTSCDVTGGKPRTTDVVYIC 203
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 422 HLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSS---EKQ 592
H + ++ E C +W YE C+G+++ Q+HE+ G++ + LG + ++
Sbjct: 341 HTVNRILTGEDCIVGGTGWWKYEFCYGKHVIQFHEDANGQR---SDILLGVFDEVVHKEW 397
Query: 593 AKLEAEMKAA-QESKQIPKTTKV 658
KL+ + A Q + QI + +++
Sbjct: 398 VKLDRHARGAIQGNNQIDQISQI 420
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 40.7 bits (91), Expect = 0.001
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 6/172 (3%)
Frame = +2
Query: 260 NLNENFVDGEKNKSQNQELVKVTTTNKESYECQLPELRSTESTSIDDYDGPSPL-HLLKP 436
+L + V+ + S Q L+ VT+ + + C LP++ + P L
Sbjct: 58 DLEKRIVNRIPDDSTEQNLMFVTSKGGQKFACSLPDVEDVKKDKPKSSKNPKIYGDALAA 117
Query: 437 LMNKEMC-SYRLESYWSYEVCHGRYIRQYHEE--REGKQINTQEYFLGYWSSEKQAKLEA 607
+ C R +WSY +C G+ I Q H E +EG N F G
Sbjct: 118 SFYVDKCVKLRGNHWWSYILCRGQTIEQVHGEPGQEGYVKNILGLFDG----------SL 167
Query: 608 EMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLN--GKPRLTRVHYVC 757
+M + QES L VE GT CDL +PR+T V Y C
Sbjct: 168 KMPSYQESTD---------DRLLFVEETYTSGTFCDLEEYREPRMTSVRYEC 210
>Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 602 EAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDG 703
EA MK E ++P T V+GV LP ++D G
Sbjct: 138 EAAMKKHGEKNEVPGKTNVDGVDLPKGWSLVDGG 171
>Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 602 EAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDG 703
EA MK E ++P T V+GV LP ++D G
Sbjct: 138 EAAMKKHGEKNEVPGKTNVDGVDLPKGWSLVDGG 171
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 509 IRQYHEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPK 646
+R+ EE + K++ +E + + E + KLEAEM+ E +I +
Sbjct: 463 VRKLKEEEKRKRVLEEEMEMKRKNEEAKIKLEAEMREKAEQAEIKR 508
>AL021479-3|CAA16324.1| 279|Caenorhabditis elegans Hypothetical
protein Y22F5A.5 protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 242 NWPGNPNLNENFVDGEKNKSQNQELVKVTTTNK 340
NWP NP N NF++ +++Q L TN+
Sbjct: 148 NWPNNPTANVNFINSIISRAQQYGLSVGIYTNQ 180
>Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical
protein F32D8.12c protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 677 NVEIVMDDGTICDLNGKPRLTR 742
N+E+V+ DGTI D GK R R
Sbjct: 84 NLEVVLADGTIIDTKGKGRCPR 105
>Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical
protein F32D8.12b protein.
Length = 460
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 677 NVEIVMDDGTICDLNGKPRLTR 742
N+E+V+ DGTI D GK R R
Sbjct: 161 NLEVVLADGTIIDTKGKGRCPR 182
>Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical
protein F32D8.12a protein.
Length = 474
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 677 NVEIVMDDGTICDLNGKPRLTR 742
N+E+V+ DGTI D GK R R
Sbjct: 175 NLEVVLADGTIIDTKGKGRCPR 196
>L19120-1|AAA28155.1| 815|Caenorhabditis elegans kinesin heavy
chain protein.
Length = 815
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 509 IRQYHEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVAL 673
++Q H+ + KQ+ + Y + SEK +K A+ +E+K I K+ G+ +
Sbjct: 215 VKQEHQTTK-KQLTGKLYLVDLAGSEKVSKTGAQGTVLEEAKNINKSLTALGIVI 268
>L07144-3|AAK21446.1| 815|Caenorhabditis elegans Uncoordinated
protein 116 protein.
Length = 815
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 509 IRQYHEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVAL 673
++Q H+ + KQ+ + Y + SEK +K A+ +E+K I K+ G+ +
Sbjct: 215 VKQEHQTTK-KQLTGKLYLVDLAGSEKVSKTGAQGTVLEEAKNINKSLTALGIVI 268
>AB017163-1|BAA32594.1| 815|Caenorhabditis elegans kinesin Heavy
chain protein.
Length = 815
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 509 IRQYHEEREGKQINTQEYFLGYWSSEKQAKLEAEMKAAQESKQIPKTTKVEGVAL 673
++Q H+ + KQ+ + Y + SEK +K A+ +E+K I K+ G+ +
Sbjct: 215 VKQEHQTTK-KQLTGKLYLVDLAGSEKVSKTGAQGTVLEEAKNINKSLTALGIVI 268
>AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical
protein ZC190.6 protein.
Length = 547
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 610 FSLQLSLLFRAPISQEIFLGVDLFALSFFVILPDIPSMAYFIAPIAFQSV*THF 449
FSL S++ S + +G D+F+ + + L DI S + I IA+Q +H+
Sbjct: 127 FSLLGSIIISIGFSYTVHMGQDMFSPTVAMTLVDISSCIFLI--IAWQKSLSHY 178
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 323 VTTTNKESYECQLPELRSTESTSIDDYDGP 412
+ T N+ CQLP L S S+D++ GP
Sbjct: 472 IATANRRCV-CQLPSLLGFTSKSLDNFQGP 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,185
Number of Sequences: 27780
Number of extensions: 339262
Number of successful extensions: 1069
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -