Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e13
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    28   0.51 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   1.6  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   1.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   2.7  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   3.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   3.6  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    24   8.3  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   8.3  

>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 295 FSLPRLQFTITYYNFLVDFMIW*SSCWLPLVLASCRNKCTKNRIYNSDNTGLWCICNRLR 116
           +SLP L   +  Y++  D M    S W  +++   R + T N+ Y   +  LWC+  R+ 
Sbjct: 174 YSLPVLIRHVLLYDYYTDDMK--DSLWRAMIIYVSR-QVTSNK-YTKFH--LWCVQKRIG 227

Query: 115 NLRTALL 95
           N+R  L+
Sbjct: 228 NIRMYLV 234


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 105 VRRLRRRLQMHHKPVLSEL*MRFFVHLFRQEASTSGSQQE 224
           +R +  R+Q++ KP+  EL  ++F  ++ +  +  GS  E
Sbjct: 124 LRSVCERIQLNGKPISQELFTKYFFDVWERLENAVGSDSE 163


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 207 WCWLLAGTNARRIAFTI 157
           WCWL+AG     IA ++
Sbjct: 98  WCWLIAGAGCMCIALSV 114


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 214 LPLVLASCRNKCTKNRIYNSDNTGLWCICNRLRNLRT 104
           +P  L    ++C     YN +  G +CIC+ + N  T
Sbjct: 97  IPCNLRKSVDECGSENDYNHNFEGRFCICDTVYNPET 133


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = +1

Query: 106 CGGCGDDCKC---TINQC-CQNCKCDS 174
           C  C + C C    ++ C C +CKC S
Sbjct: 23  CQDCKESCGCKSSAVDNCKCSSCKCAS 49



 Score = 25.0 bits (52), Expect = 3.6
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = +1

Query: 115 CGDDCKCTINQCCQNCKCDSS----CICSGKKPA 204
           C    KC    C ++C C SS    C CS  K A
Sbjct: 15  CDCQSKCGCQDCKESCGCKSSAVDNCKCSSCKCA 48


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 183  NARRIAFTILTTLVYGAFAIVSATSARHC*WFEMRLIWLN 64
            NA+  A T  TT V+G   +V+ TSA     F  +  W N
Sbjct: 2060 NAQVTAVTTKTTNVHGDEMVVTTTSAYENEKFSSKTEWRN 2099


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  SHFKPLTMPCGGCGDDCKCTI 141
           S FK LT  C G  D+C C +
Sbjct: 702 SSFKTLTTMCFGGDDNCGCQV 722


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 221 LLASTGAGFLPEQMHE 174
           L+A T  G +PE++HE
Sbjct: 256 LIAKTAEGLVPEEIHE 271


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 6   YVFS*SNKSVLQHKTFVIQHLTKLVSFQTINNAVRRL 116
           Y FS   + V   K   + + T+L S + INN   RL
Sbjct: 446 YYFSLQRRLVRLRKCLKVSNTTELKSMKLINNNPSRL 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,190
Number of Sequences: 5004
Number of extensions: 26321
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)