Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e12
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   221   1e-58
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   210   2e-55
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    28   1.1  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.5  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   4.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   5.9  

>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  221 bits (539), Expect = 1e-58
 Identities = 104/159 (65%), Positives = 130/159 (81%)
 Frame = +2

Query: 221 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 400
           S+F V+GGHRAI ++RIGG++  ++ EG HF IPW +  I YD+R++PR ISS TG+KDL
Sbjct: 35  SLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDL 94

Query: 401 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 580
           QMVNI+ RVLSRPD + L  +YR LG DYDE+VLPSI NEVLKSVVA+FNASQLITQR++
Sbjct: 95  QMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRER 154

Query: 581 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVE 697
           VS L+R  L++RAA FNI+LDDVSLT + F  E+TAAVE
Sbjct: 155 VSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVE 193


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  210 bits (512), Expect = 2e-55
 Identities = 96/159 (60%), Positives = 129/159 (81%)
 Frame = +2

Query: 221 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 400
           S++ V GG RA++F+R+ GVQ+ V  EG HF IPW Q  I+YD+R+RPR I++ TGSKDL
Sbjct: 25  SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDL 84

Query: 401 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 580
           QMV+++LRVL RP+  ML  +Y+ LG DYDE+VLPSI NE+LKSVVA+F+A++LITQR+ 
Sbjct: 85  QMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREV 144

Query: 581 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVE 697
           VS  IR+ELV+RA +F I L+DVS+T ++FGKE+T AVE
Sbjct: 145 VSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFTKAVE 183


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = -2

Query: 669 KLSSVRDTSSRIILKSAARSTNSLLISRDTC*RCVISWEALNLATTDFRTSLHIDGKTFS 490
           ++SS   + S  I  +++ + +S +IS         S      +++DF +S+       S
Sbjct: 506 EVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGIS 565

Query: 489 S*SVPSCLYIVASILASGRESTRREMFTICKS 394
           S S+PS    V+SIL+S   S      +I  S
Sbjct: 566 SSSIPSTFSSVSSILSSSTSSPSSTSLSISSS 597


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 281 QQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKD 397
           Q H F +  ++ +PW+  P      +  R +  PTG+ D
Sbjct: 324 QIHYFEDFGYYHLPWYHCPTDVQSHATARCLCDPTGTID 362


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 389  SKDLQMVNISLRVLSRPDANML--ATMYRQLGTDYDEKVLPSICNEVLKSVV 538
            S DLQM ++ ++ L    ++ L   T+Y  + +DY+  V  S+C E+L   +
Sbjct: 1252 SNDLQMESVCMKFLREKLSHELKELTVYYMVESDYEPDV--SLCPELLSLAI 1301


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 459 QCTDNLEQIMMKRFCHLYAMKS*NRLLPNSMP 554
           QC   LE  +  RF H Y       L+PN+MP
Sbjct: 174 QCKMVLENHITSRFPHFYTKLPDVSLVPNNMP 205


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 231 PWKEVIVPLCSTE*EEYNSTYSLKVCTSVYRGFNTPSF 344
           P    + PL  T  E ++S+ SLK  + +++ FN  +F
Sbjct: 114 PHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNF 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,011
Number of Sequences: 5004
Number of extensions: 59326
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)