Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e12
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 211 3e-55
04_04_0143 - 23091613-23092467 199 2e-51
02_04_0362 - 22366668-22367516 199 2e-51
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 180 7e-46
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 170 1e-42
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 94 1e-19
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 32 0.38
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 30 1.5
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 211 bits (516), Expect = 3e-55
Identities = 98/159 (61%), Positives = 128/159 (80%)
Frame = +2
Query: 221 SVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDL 400
S++ VEGGHRAI+FNR+ G++ V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DL
Sbjct: 30 SLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDL 89
Query: 401 QMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ 580
QMV I LRVL+RP L T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+
Sbjct: 90 QMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREA 149
Query: 581 VSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVE 697
VS IR+ L ERA++FNI LDDVS+T LSFGKE+T A+E
Sbjct: 150 VSREIRKILTERASNFNIALDDVSITSLSFGKEFTHAIE 188
>04_04_0143 - 23091613-23092467
Length = 284
Score = 199 bits (485), Expect = 2e-51
Identities = 92/161 (57%), Positives = 123/161 (76%)
Frame = +2
Query: 215 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 394
S S++TV+GG RA++F+R GV EG HF +PW Q P ++DIR+RP SS +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 395 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 574
DLQMVN++LR+LSRPD L T++ LG +YD+KVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 575 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVE 697
VS L+R L+ RA +FNIILDDV++T LS+G E++ AVE
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFSQAVE 189
>02_04_0362 - 22366668-22367516
Length = 282
Score = 199 bits (485), Expect = 2e-51
Identities = 90/161 (55%), Positives = 125/161 (77%)
Frame = +2
Query: 215 SQSVFTVEGGHRAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSK 394
S +++TV+GG RA++F+R GV +EG HF +PW Q P I+DIR+RP SS +G+K
Sbjct: 30 STALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWLQKPFIFDIRTRPHSFSSTSGTK 89
Query: 395 DLQMVNISLRVLSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQR 574
DLQMV+++LRVL+RPD + L ++ LG +YDEKVLPSI NEVLK+VVA+FNA QL+T+R
Sbjct: 90 DLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER 149
Query: 575 QQVSLLIRRELVERAADFNIILDDVSLTELSFGKEYTAAVE 697
VS L+R L+ RAA+FNI+LDDV++T L++G E++ AVE
Sbjct: 150 PHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFSQAVE 190
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 180 bits (439), Expect = 7e-46
Identities = 86/141 (60%), Positives = 109/141 (77%)
Frame = +2
Query: 275 GVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANML 454
G V+ EG HF IPWF+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L
Sbjct: 126 GTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKL 185
Query: 455 ATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNI 634
T+YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA +FNI
Sbjct: 186 PTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNI 245
Query: 635 ILDDVSLTELSFGKEYTAAVE 697
LDDVS+T LSFGKE+T A+E
Sbjct: 246 ALDDVSITSLSFGKEFTHAIE 266
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +2
Query: 221 SVFTVEGGHRAIMFNRIGGVQ 283
S++ VEGGHRAI+FNRI G++
Sbjct: 36 SLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 170 bits (413), Expect = 1e-42
Identities = 83/138 (60%), Positives = 107/138 (77%)
Frame = +2
Query: 284 QHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRVLSRPDANMLATM 463
Q V+ EG F I F+ PIIYD+R+RP + S +GS+DLQMV I LRVL+RP L T+
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 464 YRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQVSLLIRRELVERAADFNIILD 643
YR LG +++E+VLPSI +E LK+VVA++NASQLITQR+ VS IR+ L ERA++FNI LD
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 644 DVSLTELSFGKEYTAAVE 697
DVS+T LSFGKE+T A+E
Sbjct: 336 DVSITSLSFGKEFTHAIE 353
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 93.9 bits (223), Expect = 1e-19
Identities = 51/110 (46%), Positives = 70/110 (63%)
Frame = +2
Query: 248 RAIMFNRIGGVQQHVFTEGMHFRIPWFQYPIIYDIRSRPRKISSPTGSKDLQMVNISLRV 427
R I N+ + Q + E HF IPWF+ I+D+ RP + S +GS+DLQMV L V
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 428 LSRPDANMLATMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQ 577
L+RP L T YR LG ++ E+VL S+ +E LK+VVA++NASQLI R+
Sbjct: 383 LTRP----LPTKYRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 236 EGGHRAIMFNRI--GGVQQHVFTEGMHFRIPWFQYPIIYDIRSRP 364
EGGHR +++ + GG+Q+H++ G +I F IY ++ RP
Sbjct: 194 EGGHRLLVYEFMANGGLQEHLYPNGAFEKIETFS---IYLVKQRP 235
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +2
Query: 458 TMYRQLGTDYDEKVLPSICNEVLKSVVAKFNASQLITQRQQ---------VSLLIRRELV 610
T+ +G D+K + N+ K VV + +L+ + VS R+E+V
Sbjct: 51 TLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIV 110
Query: 611 ERAADFNIILDDVSLTELSFGKE 679
ERAA +I++ + +LS+ E
Sbjct: 111 ERAAQLDIVISTLKFIQLSYDYE 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,118,889
Number of Sequences: 37544
Number of extensions: 375680
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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