Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29e03
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370...    31   1.1  
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129...    29   3.5  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    29   3.5  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    29   3.5  
03_05_0871 + 28396964-28399843                                         28   6.1  
10_07_0077 + 12645091-12646750,12647612-12648273                       28   8.0  
08_01_0117 + 941334-941339,941720-941906,942444-942565,942648-94...    28   8.0  

>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
            13137184-13137416,13137459-13137731,13137877-13138265,
            13138325-13139156,13139847-13139922,13140027-13140414,
            13141395-13141748,13142069-13142333,13143366-13143716
          Length = 1317

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 260  LPEEVTYRSVKLSEDREGTDEFTHNLRIWMKDKMSIAAVKEGTDQLVGLLIMRIQE 427
            LP+ + ++ +KL    E T   T    +WM    S+ ++ EG   L  L+ + I +
Sbjct: 1206 LPKLILWKCLKLKSLPESTKHLTSLKSLWMVGCSSMTSLPEGLGHLASLMELNIND 1261


>12_01_0173 -
           1292164-1293036,1294063-1294098,1294195-1294334,
           1295592-1295748,1295862-1296035,1296146-1296396,
           1299446-1299590
          Length = 591

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 445 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 573
           Y   +KD     L++SN+ILQ S R+ G ++    R  P +L+D Y
Sbjct: 73  YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 118


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 445 YIQPHKDNSQRALHISNEILQRS-REAGVYLRSARR--PEILQDLY 573
           Y   +KD     L++SN+ILQ S R+ G ++    R  P +L+D Y
Sbjct: 75  YNSANKDKKVSFLYLSNDILQNSKRKGGEFVNEFWRVLPGLLKDFY 120


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 496 EILQRSREAGV-YLRSARRPEILQDLYSRFEESLQA 600
           +I++R  E G+ Y+ +  R  IL D Y ++EESLQA
Sbjct: 225 DIIRRLFERGLAYVGTDYRSNILWDEYIKYEESLQA 260


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 441 ENAHFSCIRMMSNPTSWSVPSLTAAIDILSFIQILKL 331
           E+ HFSCI+ ++   SW V S   ++  L+ +  LKL
Sbjct: 827 EDPHFSCIKSITLSGSWIVLSPMESLGSLTTLYELKL 863


>10_07_0077 + 12645091-12646750,12647612-12648273
          Length = 773

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 252 NIICPKR*RTGQLNYP 299
           NI CP++ R G LNYP
Sbjct: 659 NITCPRKFRPGDLNYP 674


>08_01_0117 +
           941334-941339,941720-941906,942444-942565,942648-942656,
           942965-943067,943204-943247,943487-943516,943615-943737,
           943816-943841,943934-944015,944137-944178,944259-944292,
           944424-944451,944779-945022,945023-945124,945318-945443,
           945533-945715,945803-945961
          Length = 549

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 479 LYTSVMKFYNEVEKPVCIYEALGVRRYFKIY 571
           LY  V+ F+ +V + +C+   L +R +FK++
Sbjct: 350 LYLLVLSFHLQVNRIMCLIVTLSLRAFFKMH 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,767
Number of Sequences: 37544
Number of extensions: 364823
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)