Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29e01
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 36 0.006
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 30 0.29
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.6
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 27 2.1
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 27 2.7
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 3.6
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.8
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 4.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.3
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 8.4
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 387 HGDHSS-HNMGMSMTFHGGYIET-ILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYY-- 554
HG +S+ + M MTF+ Y I+F W++ + +F+ S AI I+ L+E L+ +
Sbjct: 3 HGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLRSFTS 62
Query: 555 -RKHLLWKTYAGLQ 593
++ + YAG Q
Sbjct: 63 LKETEFQRGYAGQQ 76
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 30.3 bits (65), Expect = 0.29
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Frame = +3
Query: 243 HAGHEHHGIDHSRHIGHQMPINGLLNSSYNRIVHNTDMNDHNVHTFSGHGDHSS--HNMG 416
H + H +H+ + H N + + + N D + H H H H H +
Sbjct: 534 HENSQEHHHEHNHNHDHIHKYNEKCDHE-SISLQNLDNDHHCHHHHENHNMHGIFLHIIA 592
Query: 417 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 596
+M G + TIL W++ T A I + +K K+LL T +Y
Sbjct: 593 DTMGSVGVIVSTILIQWFSWTGFDPLASLIIAALIFVSVLPLIKDSAKNLLSVTDPESEY 652
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 234 DMGHAGHEHHGIDHSRH 284
D H H+HHG DH H
Sbjct: 21 DYDHHNHDHHGHDHHSH 37
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 342 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETI 455
H+T DH+ H GH DH SH+ + + ++ I
Sbjct: 17 HHTHDYDHHNHDHHGH-DHHSHDSSSNSSSEAARLQFI 53
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 381 SGHGDHSSHNMG-----MSMTFHGGYIETILF--SWWNVTEVGEFVGSFFAIFIIALLYE 539
SG G SS N MSM ++ YI F W++ +F GS IF A+ E
Sbjct: 12 SGMGMGSSSNSSAATCRMSMLWNW-YIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAIE 70
Query: 540 GLKYYRK 560
GL ++
Sbjct: 71 GLSLVQR 77
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 234 DMGHAGHEHHGIDHSRHIGH 293
D+ H GH HH H H H
Sbjct: 293 DLHHEGHHHHHHHHHHHHSH 312
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 199 TRWTNIMNTTIWIWAMLGMNTM 264
T W ++N T WI+++L N +
Sbjct: 227 TNWLGLLNGTGWIYSLLNQNVL 248
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Frame = -3
Query: 435 RETSWTCPYCGYCDHHGLKKCGHC 364
R W CP CG+ + C C
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC 366
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 342 HNTDMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIETILFS 464
+N + + ++T G GD S+ + ++ T+H G + LF+
Sbjct: 585 YNINYPPYALNTEQGEGDLSNLGVSVNATYHDGTVRYNLFN 625
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 6.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 662 YNLWFICCTNIGNSLVWW 609
Y ++ +C IG S VWW
Sbjct: 2017 YEIYSVCAFFIGASFVWW 2034
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 435 RETSWTCPYCGYCDHHGLKKCGHC 364
R TCP CGY D G +C C
Sbjct: 357 RYVEGTCPKCGYDDARG-DQCDGC 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,875
Number of Sequences: 5004
Number of extensions: 72538
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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