Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d23
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.17 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.68 
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   4.8  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   6.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   8.4  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 338 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 466
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +2

Query: 290 YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 448
           +R   +S +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +2

Query: 398 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 577
           TP +++   P+P  +       SLPI  L     T +PA    A +  S  D +    K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372

Query: 578 TQDPTSKANETIDERQSFTY 637
              P S A  + +E+Q  TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 110 NKWNTSNANFH*IINLVNFLDILHQNIKYR 21
           NK+N +N N + ++N     DI+    KY+
Sbjct: 71  NKFNDNNENIYQLLNSTRLRDIIEGTEKYK 100


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +2

Query: 272 NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 430
           NY  ++ RN+ +N+ +  G       +S     ++  P++   T S  +         PL
Sbjct: 49  NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108

Query: 431 PKTSTVETLHGSLPIQG 481
           P TST  T   S+P  G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 296 NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 466
           NK N+++  G  AP       V+  N+L   +   +    EK      P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546

Query: 467 LPIQGLKV 490
            P+  L +
Sbjct: 547 QPLTSLNM 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,124
Number of Sequences: 5004
Number of extensions: 56084
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)