Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d23
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587...    33   0.31 
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    32   0.54 
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664...    31   0.71 
07_03_1525 + 27448257-27448582,27450741-27450973,27451280-274529...    29   2.9  
04_03_0621 - 18102243-18104249                                         29   3.8  
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530...    28   6.6  
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430...    28   8.8  

>07_03_1526 +
           27456426-27456700,27457936-27458023,27458129-27458725,
           27458731-27460056,27460283-27460729
          Length = 910

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 266 FTTFRSAGVRSRNETSILLSMSEKKIARLQKINCQKFFSYHYRNNLH 126
           FT+FRSA V S  +  +LL  S K + RL +I+ +      Y+ + H
Sbjct: 570 FTSFRSAMVNSEAQQKVLLKSSLKVLQRLTRIDGEIAIKLRYKISKH 616


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 266 FTTFRSAGVRSRNETSILLSMSEKKIARLQKINCQKFFSYHYRNNLH 126
           FT+FRSA + S ++  +LL  S K + RL +I  +   +  Y+ + H
Sbjct: 782 FTSFRSAIMNSESQQKVLLKSSLKVLQRLTRIEGEIGITLRYKISKH 828


>07_03_1510 +
           27264999-27265371,27265485-27265546,27265768-27266436,
           27266842-27267288
          Length = 516

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 266 FTTFRSAGVRSRNETSILLSMSEKKIARLQKINCQKFFSYHYRNNLH 126
           FT+FRSA V S  +  +LL  S K + RL  I  +   +  Y+ + H
Sbjct: 243 FTSFRSAMVNSEAQQKVLLKSSLKVLQRLTSIEGEIGITLRYKISKH 289


>07_03_1525 +
           27448257-27448582,27450741-27450973,27451280-27452919,
           27453129-27453575
          Length = 881

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 266 FTTFRSAGVRSRNETSILLSMSEKKIARLQKINCQKFFSYHYRNNLH 126
           FT+FRSA + S  +  +L+ +S + + RL  I  +   +  Y+   H
Sbjct: 540 FTSFRSATLNSEAQQKVLIKLSLQALQRLTSIEGEIGMTLRYKITKH 586


>04_03_0621 - 18102243-18104249
          Length = 668

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 362 VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSL 469
           +A SL+ + + PT   +  +   P+T+TV+T H  L
Sbjct: 23  IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLL 58


>06_01_0724 +
           5299278-5299542,5299690-5299950,5300246-5300351,
           5300633-5300697,5300759-5301233,5302239-5302347,
           5302432-5302710,5303025-5303231,5303319-5303468,
           5304164-5304277
          Length = 676

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 387 WSYQHPPRKRSSCPC--QKLQLWKLCMDPCRFRV*RSKQELEYLPKYVSLILTFHTRISR 560
           WS  H P  R +C C   ++       +PC     R +  ++Y    ++ I       +R
Sbjct: 240 WSVSHDPHPRWTCKCNPSRVSFSVSNKNPCTLHQARLQNLIQYFQCPMTQIGQRKKNRNR 299

Query: 561 LTVAKKLRTRLRRPMKLLMKGN 626
            T  K +    RR ++ L++ N
Sbjct: 300 QTCTKGMDAAGRRIVRALIRAN 321


>02_05_0787 -
           31742685-31742702,31742703-31742744,31742993-31743022,
           31743337-31744183,31744431-31744560,31744682-31744814
          Length = 399

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 320 AGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTS 442
           AG L+P   SS  +   S   L  +P+P   T + PLP +S
Sbjct: 218 AGLLSPPAMSSAALSPMSTSSLSPLPSPMSSTALSPLPPSS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,372,604
Number of Sequences: 37544
Number of extensions: 349956
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)