Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d20
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    33   0.031
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    27   2.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    27   3.5  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    26   4.7  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   4.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.1  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   8.1  

>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 233 LGMMKQFVKALDKNNASFEYLCKKNPRLSDAKIKGVFDGPQIRSLMA 373
           L +   +VKAL++ +A++E L K +  L D+ +  +FDG    S+ A
Sbjct: 211 LSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTA 257


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 479 NKVANLLDKYQKLGCNMNIKLHFLDSHVDFF 571
           N+V N L   Q +  +   ++HFL++H+  F
Sbjct: 80  NRVCNALALLQCIASHPETRIHFLNAHITLF 110


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 146 KNLKVETKNVIQKNLISPEKILLPPLHIKLGMMKQFVKALDKNNASFE 289
           K ++V  +N      ++ E+I+   L I+LG++   VK  D  N+SFE
Sbjct: 631 KEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFE 678


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = -2

Query: 617 ETFLPALYCNH-----QDYQEK-SPHVNLESGVLCSYYTPIFDTYPISLQPYFYSRDVYY 456
           ETFLP L         Q+  EK S HV+ ES  +   +  ++D     L P    +  YY
Sbjct: 419 ETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDYY 478


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 443 NFLGNNKHPDYKNKVANLLDKYQKLGCNMNIKLHFLDSHVDFFPDNL 583
           +++ + KHP+YKN     ++KY K G     K+   D     F +N+
Sbjct: 78  HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +3

Query: 474  IKIRLQTYWISI---KNWGVI*T*NSTF*IHMWTFFLIILVITV 596
            I + LQ YW+S    ++W  + + ++   +H W  FL++++  V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 558 MWTFFLIILVITVKSREKGFTRT*KLW 638
           ++ F  +I+++ + S+  GF  T K+W
Sbjct: 222 LFLFISMIVILAMSSKNHGFNETSKVW 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,742
Number of Sequences: 5004
Number of extensions: 66129
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)