Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d18
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   4.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.7  

>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 523 GIQ*HMIIYRNFCMGIIQNLFSFPPIAMVRLIIRQN 630
           GIQ H ++  +F  G + ++ SF P ++ RLII  N
Sbjct: 201 GIQVHQLV--DFLRGTLPHVSSFSPSSIKRLIILGN 234


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 313 RAGERKLENQRFAMNQMNHFQ*TKISNCTNLFYFQ*TLD 429
           R   RK+E +   +N+ N+   +  +NC   F  Q  LD
Sbjct: 3   RTKRRKIEKEASLLNERNNLLESDFANCYRAFQHQLKLD 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,969
Number of Sequences: 5004
Number of extensions: 60320
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)