Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d16
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   1.8  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.1  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    25   7.3  
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    25   9.6  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    25   9.6  

>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 345 NKIIGDLYLNLFSGKIFNQ*IDLQSVFLCFH--NISVVPWKVLEPINRTKYKFVPKV 181
           N + G   ++  +G +FN  +D  S+    +  N+S  PW  +EP  R +    P +
Sbjct: 440 NLLFGSQLMDPVTGVVFNDQMDDFSIPGASNAFNLSPSPWNFIEPFKRPQSSSAPTI 496


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 334 DDFIVIEAKHEEKKDEQGFISRHFVRKYKLPQGSQPNKI 450
           D+F+     HE KK  + F+   ++ K K     +PNK+
Sbjct: 11  DEFVAKLLIHESKKKNKSFVDHGYIEKEKTK--LRPNKV 47


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 566 NYE*KKRKFNNEYFLGFPRFVD 631
           N E KKR FNN+Y    P  +D
Sbjct: 63  NAEQKKRAFNNDYDFDSPEAID 84


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 310 EQIQVKVADDFIVIEAKHEEKKDEQGFISRHFVRKYKLPQGSQPNKIT-STLSADGVLKI 486
           EQ+Q K+ +    +     E   + G + R F  KY L  GS+P+ +T   ++ D   K 
Sbjct: 116 EQVQ-KLEEKMSSLVVNDPELAQKVGRL-RQFFEKYGLEAGSKPSPLTILKITRDPEFKQ 173

Query: 487 VVPKETAVLKDTAI 528
           +    T + K + I
Sbjct: 174 LAETITEIFKKSGI 187


>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -1

Query: 559 LASLSPRMPQVSQYLSK--QPFLLAPLFSTHHQ 467
           L     RM Q+   + K  +  +LAP+F  HHQ
Sbjct: 23  LIEFQDRMRQIENTMGKGTKTEMLAPIFQLHHQ 55


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 321 LNLFSGKIFNQ*IDLQSVFLCFHNISVVPWK 229
           LN   GK+ +  ID QS+ +C   + +  WK
Sbjct: 12  LNSSLGKLADHIIDSQSISICKQVVELPEWK 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,202
Number of Sequences: 5004
Number of extensions: 50352
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)