Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d15
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    23   4.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    22   9.3  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    22   9.3  

>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 33  YYLFS*MRRLTXIKLRER*FXMGFPAAC 116
           YYLFS +  L   KLR R     FP  C
Sbjct: 659 YYLFSPLFTLELWKLRVRGALSKFPTNC 686


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 115 HAAGNPIXNQRSRSF 71
           HA GNP  N  S SF
Sbjct: 798 HALGNPESNNSSNSF 812


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 125 QILCXDETGTL 157
           +ILC D+TGTL
Sbjct: 459 EILCSDKTGTL 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,374
Number of Sequences: 5004
Number of extensions: 4987
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)