Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d15
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   7.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   7.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    19   7.2  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 47  LNEAFDXXKTARALIXNGI-SGGV*SXQILCXDETGTL 157
           + + FD   T +A+  NG+   G+ +  + C +E  +L
Sbjct: 297 VQDVFDSQLTVKAVSKNGVLLFGLANNTLSCWNEHQSL 334


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = -2

Query: 165 QXKSVPVSSXH--NICXLHTPPEI 100
           + +S PV      N C LH  PE+
Sbjct: 332 ERRSEPVEPPRRKNNCPLHCKPEL 355


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 15  TLKYXDYYLF 44
           T KY DYY++
Sbjct: 142 TNKYKDYYIW 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,377
Number of Sequences: 438
Number of extensions: 386
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)