Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29d14
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043701-3|ABP57819.1| 147|Caenorhabditis elegans Hypothetical ... 62 3e-10
Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical pr... 58 7e-09
U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical pr... 53 2e-07
U80441-6|AAT68894.1| 256|Caenorhabditis elegans Hypothetical pr... 52 3e-07
AF043701-4|ABP57821.1| 132|Caenorhabditis elegans Hypothetical ... 48 7e-06
U55856-1|AAA98020.1| 162|Caenorhabditis elegans Hypothetical pr... 44 7e-05
AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical ... 40 0.001
AL031630-20|CAE17995.1| 122|Caenorhabditis elegans Hypothetical... 31 0.89
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 29 3.6
AL031630-19|CAA20999.1| 123|Caenorhabditis elegans Hypothetical... 28 4.8
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 28 6.3
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 28 6.3
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 28 6.3
>AF043701-3|ABP57819.1| 147|Caenorhabditis elegans Hypothetical
protein K12C11.3 protein.
Length = 147
Score = 62.1 bits (144), Expect = 3e-10
Identities = 36/122 (29%), Positives = 58/122 (47%)
Frame = +3
Query: 261 ILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRVNITKSECGTN 440
ILF+ WK + + S + AG L E LKY + A + A D +++ G
Sbjct: 29 ILFENWKVQDMTTMIWSCFVVGFAGFLLEFLKYSKWAASMQMRPAGDVD---RRTKYGG- 84
Query: 441 SPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXXXXXXXXXYFF 620
C + + + H++Q HF Q+ +++LM I+MT+NV++C YFF
Sbjct: 85 --CVVPSENRKKLFWARHVVQAMYHFWQTLLAFILMNIYMTFNVYICLSLCLGLTIGYFF 142
Query: 621 FG 626
FG
Sbjct: 143 FG 144
>Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical
protein F58G6.3 protein.
Length = 134
Score = 57.6 bits (133), Expect = 7e-09
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRAS-SASDSR 407
M FH+ +LF W T+A ++ + + + +AG++ E +KY R + R S S +S
Sbjct: 18 MWFHTKPQDTVLFSTWNITSAGKMVWACILVAIAGIILEAIKYNRRLIQKRQSPSKKESY 77
Query: 408 VNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXX 587
++ +LS H QT L F+Q SY LMLIFMT+++WL
Sbjct: 78 IS--------------------RLLSTMHFFQTFLFFVQLGFSYCLMLIFMTFSIWLGLA 117
Query: 588 XXXXXXXXYFFFG 626
+ FG
Sbjct: 118 VVIGLSIGFLIFG 130
>U80441-7|AAB37655.1| 252|Caenorhabditis elegans Hypothetical
protein F27C1.2a protein.
Length = 252
Score = 57.6 bits (133), Expect = 7e-09
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Frame = +3
Query: 210 GHD-HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYR---EALH 377
GH+ H M FH ILF W+T + + S AIF+ G YEG+K++R +
Sbjct: 70 GHEGHMMKMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIFIMGATYEGVKWFRVFLQMTQ 129
Query: 378 TRAS-SASDSRVNITKSECGT----------NSPCAGTAVVKYSM--------LSGGHII 500
T+A A+ S V T+S GT N P + ++ S+ S +I
Sbjct: 130 TQAQVLANKSCVETTRSSGGTCHQSVTHSQSNKPQSEPFLISASVARTPATSPFSPQRLI 189
Query: 501 QTCLHFIQSTASYMLMLIFMTYNVWL 578
Q L+ Q +Y LMLI MTYN +L
Sbjct: 190 QMLLYIFQLVLAYWLMLIVMTYNTYL 215
>Z68217-8|CAI59117.1| 156|Caenorhabditis elegans Hypothetical
protein F58G6.9a protein.
Length = 156
Score = 53.6 bits (123), Expect = 1e-07
Identities = 38/135 (28%), Positives = 60/135 (44%)
Frame = +3
Query: 219 HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSAS 398
H M +H V +LF+ W +A + + + AG+L E LKY R A R
Sbjct: 19 HRMWMWYHVDVEDTVLFKSWTVFDAGTMVWTCFVVAAAGILLEALKYARWATEERMKIDQ 78
Query: 399 DSRVNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWL 578
++ + TK G P KY+ HII + HF Q +Y+LM ++M ++V++
Sbjct: 79 ENVDSKTKYG-GIKIPGKSE---KYNFWKR-HIIDSLYHFWQLLLAYILMNVYMVFSVYI 133
Query: 579 CXXXXXXXXXXYFFF 623
C +F F
Sbjct: 134 CLSLCFGLAIGHFVF 148
>Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical
protein F58G6.7 protein.
Length = 166
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTR--------- 383
M FH + ILF+ WK N S + IFL E LK+ R L +
Sbjct: 8 MYFHFRIEEPILFREWKPLNTTAYVFSCIEIFLIAFCLEALKFGRTKLSPKVKIVEKKVD 67
Query: 384 --ASSASDSRVNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIF 557
S+ D NI ++ T + S++S H+ + L F+Q Y LML+
Sbjct: 68 CCCSTEKDGLWNIPETIPLTQKTVTLAPFTRDSLISKFHMASSLLVFVQHFIDYSLMLVS 127
Query: 558 MTYNVWLCXXXXXXXXXXYFFFG 626
MTYN + YFF G
Sbjct: 128 MTYNWPIFLSLLAGHTTGYFFLG 150
>U80441-6|AAT68894.1| 256|Caenorhabditis elegans Hypothetical
protein F27C1.2b protein.
Length = 256
Score = 52.4 bits (120), Expect = 3e-07
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Frame = +3
Query: 210 GHD-HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYR---EALH 377
GH+ H M FH ILF W+T + + S AIF+ G YEG+K++R +
Sbjct: 70 GHEGHMMKMWFHGGFEEVILFDFWRTDSLFGMLLSCAAIFIMGATYEGVKWFRVFLQMTQ 129
Query: 378 TRA-----SSASDSRVNITKSECGT----------NSPCAGTAVVKYSM--------LSG 488
T+A S + + T+S GT N P + ++ S+ S
Sbjct: 130 TQAQVLANKSCVEFALQTTRSSGGTCHQSVTHSQSNKPQSEPFLISASVARTPATSPFSP 189
Query: 489 GHIIQTCLHFIQSTASYMLMLIFMTYNVWL 578
+IQ L+ Q +Y LMLI MTYN +L
Sbjct: 190 QRLIQMLLYIFQLVLAYWLMLIVMTYNTYL 219
>AF043701-4|ABP57821.1| 132|Caenorhabditis elegans Hypothetical
protein K12C11.6 protein.
Length = 132
Score = 47.6 bits (108), Expect = 7e-06
Identities = 37/132 (28%), Positives = 59/132 (44%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 410
M FH+ +LF+ W T+ + I +AG+L E +K+ R + +
Sbjct: 11 MWFHTKTQDTVLFKTWNVTDTPTMVWVCCIIVVAGILLELIKFLRWKIE---------KW 61
Query: 411 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLCXXX 590
+ + E + S + + S HI QT L +Q + SY+LML+FMT++VWL
Sbjct: 62 HKNRDELVSRSYIS-------RLFSPIHIGQTILFMVQLSFSYILMLLFMTFSVWLGIAV 114
Query: 591 XXXXXXXYFFFG 626
Y FG
Sbjct: 115 VVGLGIGYLAFG 126
>U55856-1|AAA98020.1| 162|Caenorhabditis elegans Hypothetical
protein F31E8.4 protein.
Length = 162
Score = 44.4 bits (100), Expect = 7e-05
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREAL-----HTRASSA 395
M H +ILF WKT + + S + FL +LYE +K +R L R
Sbjct: 5 MTLHFGEREKILFSWWKTGSLSGMAVSMLITFLLCILYEAIKSFRYFLAVWNNQKRQQRH 64
Query: 396 SDSRVNITKSECGTNSPCAGTAVVKYSMLSG--------GHIIQTCLHFIQSTASYMLML 551
+++ + ++ G N + LSG + Q L+ +Q+ +Y LML
Sbjct: 65 AEASITNPQNSGGDNISEDSIHIAPLVQLSGFTKRLFTSYRLAQGALYGLQALLAYTLML 124
Query: 552 IFMTYNVWLCXXXXXXXXXXYFFF 623
I MTYN+ L YF F
Sbjct: 125 IAMTYNMNLILSIVVGEAVGYFLF 148
>AF043701-5|ABP57822.1| 166|Caenorhabditis elegans Hypothetical
protein K12C11.7 protein.
Length = 166
Score = 43.6 bits (98), Expect = 1e-04
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 11/143 (7%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALH--TRASSASDS 404
M FH + ILF+ WK T+ S +++F E LK+ R+ + + A D
Sbjct: 8 MYFHFRIQEPILFRQWKPTDTTGYVFSCISLFFIAFCLELLKFGRQRMTRTVKEKLAVDC 67
Query: 405 RVNITKS--------ECGTNSPCAGTA-VVKYSMLSGGHIIQTCLHFIQSTASYMLMLIF 557
+ + E A A S+ S H + L F+Q+ Y LML+
Sbjct: 68 CCSTPEGIWEIPEEPEPSPRGKLASLAPFTMESISSWRHFASSFLFFLQNFVDYSLMLVA 127
Query: 558 MTYNVWLCXXXXXXXXXXYFFFG 626
MTYN L YFF G
Sbjct: 128 MTYNYPLFFSLLAGHAIGYFFVG 150
>Z68217-9|CAN86607.1| 142|Caenorhabditis elegans Hypothetical
protein F58G6.9b protein.
Length = 142
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Frame = +3
Query: 219 HSHAMVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSAS 398
H M +H V +LF+ W +A + + + AG+L E LKY R A R
Sbjct: 19 HRMWMWYHVDVEDTVLFKSWTVFDAGTMVWTCFVVAAAGILLEALKYARWATEERMKIDQ 78
Query: 399 ---DSRVNITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYN 569
DS+ N K HII + HF Q +Y+LM ++M ++
Sbjct: 79 ENVDSKTNFWKR----------------------HIIDSLYHFWQLLLAYILMNVYMVFS 116
Query: 570 VWLCXXXXXXXXXXYFFF 623
V++C +F F
Sbjct: 117 VYICLSLCFGLAIGHFVF 134
>AC006807-1|AAK84615.1| 130|Caenorhabditis elegans Hypothetical
protein Y58A7A.1 protein.
Length = 130
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/117 (29%), Positives = 49/117 (41%)
Frame = +3
Query: 231 MVFHSCVCTEILFQGWKTTNALELFGSAVAIFLAGVLYEGLKYYREALHTRASSASDSRV 410
M FH ILF WKT A+ + + L L E L+++R+ R + +
Sbjct: 1 MSFHFGTEETILFDFWKTETAVGIAVACFITVLLAFLMETLRFFRDY---RKAQTQLHQP 57
Query: 411 NITKSECGTNSPCAGTAVVKYSMLSGGHIIQTCLHFIQSTASYMLMLIFMTYNVWLC 581
I+ + SP +I L Q T +Y LMLIFMT+N +LC
Sbjct: 58 PISPEDRLKRSPQLD-------------LIDPLLQLFQLTIAYFLMLIFMTFNAYLC 101
>AL031630-20|CAE17995.1| 122|Caenorhabditis elegans Hypothetical
protein Y38H6C.23 protein.
Length = 122
Score = 30.7 bits (66), Expect = 0.89
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 232 WCSIPACAPKYCSKDGRLPTPWSCLVQQ 315
WC I C P C +D + TP C+ ++
Sbjct: 43 WCEIKLCGPGKCMEDPKSTTPIRCVCEK 70
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 464 NGSTGTRTIGSAFALGDIDP 405
N +TGT IGSA A G IDP
Sbjct: 635 NSTTGTNGIGSAGAAGKIDP 654
>AL031630-19|CAA20999.1| 123|Caenorhabditis elegans Hypothetical
protein Y38H6C.22 protein.
Length = 123
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 229 LWCSIPACAPKYCSKDGRLPTPWSCLVQQ 315
+WC I C P C +D P C+ ++
Sbjct: 42 VWCEIKLCGPGQCIEDPMTTAPARCVCEK 70
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 314 SSNLPRRGAVRRFEILQRSAAHTGLICQRFQGQYH--QERMRNQ*SVCRYCRC 466
S N ++ R L S HT ++C+R Q +E MRN+ ++ + C
Sbjct: 31 SQNFQHSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEHNLAQVFTC 83
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 366 LCSISNLRTAP-RRGRLLLLNQTAPRRW*SSILGTIFRCTRRNGTP 232
+C +SN RT P R +L +NQ R+ S I + +C R P
Sbjct: 315 MCMVSNPRTGPGRYAAILAINQRLDRQ--SVITNRVVQCLREYWAP 358
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 366 LCSISNLRTAP-RRGRLLLLNQTAPRRW*SSILGTIFRCTRRNGTP 232
+C +SN RT P R +L +NQ R+ S I + +C R P
Sbjct: 315 MCMVSNPRTGPGRYAAILAINQRLDRQ--SVITNRVVQCLREYWAP 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,798
Number of Sequences: 27780
Number of extensions: 294364
Number of successful extensions: 849
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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