Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d07
         (483 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23C22 Cluster: Myb-like DNA-binding domain containing ...    36   0.63 
UniRef50_Q6KHX4 Cluster: Expressed protein; n=1; Mycoplasma mobi...    33   2.6  
UniRef50_Q4DVD6 Cluster: Putative uncharacterized protein; n=2; ...    32   5.9  

>UniRef50_Q23C22 Cluster: Myb-like DNA-binding domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Myb-like DNA-binding domain containing protein -
           Tetrahymena thermophila SB210
          Length = 836

 Score = 35.5 bits (78), Expect = 0.63
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 286 NNTLL*SLQWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLR 167
           N+TL  SL  + LN F +NF+  ++   F+DNQ + NN +
Sbjct: 540 NSTLFESLNALTLNNFDKNFNSALYDGNFMDNQNYHNNFQ 579


>UniRef50_Q6KHX4 Cluster: Expressed protein; n=1; Mycoplasma
           mobile|Rep: Expressed protein - Mycoplasma mobile
          Length = 1461

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -2

Query: 362 LISFNINIKTI*LMVSAFYYNIQVK*QYAVIELTMDTT--ECFLSKLSHFHI 213
           +I  N+NI +I   +  FY NI+ K Q   +EL   +T  E +L+KL +F++
Sbjct: 94  IILNNLNINSIEFQIKGFYKNIEFKTQEFNLELNSISTIIENYLNKLKNFNL 145


>UniRef50_Q4DVD6 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 1418

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 5   KNLEKIVSLTKTNEIKKKISETSKLTT 85
           + LEK++ L K ++ KKK+SE SK+TT
Sbjct: 598 QKLEKVLKLKKWSDRKKKMSELSKITT 624


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,418,955
Number of Sequences: 1657284
Number of extensions: 7840493
Number of successful extensions: 17437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17434
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)