Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d07
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 115 HCYSPTKPTHCG*LGCFRYFF 53
           H YS T P+HC  + C  +F+
Sbjct: 184 HTYSETGPSHC--VVCQNFFY 202


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 238 SQNFHIFIFYEQFLDN 191
           S+N H+F+  +QF+ N
Sbjct: 553 SKNQHLFVELDQFIQN 568


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 99  PSQHIVVSLDVSDIFFLISLVFVSETIFSRFFP 1
           P+ + + +L VSD+ FLI  +    ++F + +P
Sbjct: 67  PTNYYLFNLAVSDLLFLILGLPFELSVFWQQYP 99


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 EKTFSCIHC 263
           EK FSC HC
Sbjct: 68  EKPFSCQHC 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 458 TIFYSHLYNYLYTVVS 411
           T FY+  ++YL+T+ S
Sbjct: 90  TYFYNGKHSYLHTITS 105


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 93  GLVGL*QCLCSPIYFCRQITNSKII 167
           GLV   Q +CSP  F   +  S+++
Sbjct: 146 GLVNNTQPMCSPKLFAFDLNTSQLL 170


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 243 TFSCIHCKLYNSVLLFHLNI 302
           ++SC++  + NS L  H N+
Sbjct: 23  SYSCVNKSMLNSHLKSHSNV 42


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 343 FMLNEMSRYAKTSISFTFL 399
           F++  + RY ++++  TFL
Sbjct: 68  FLMTFLRRYGQSAVGLTFL 86


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 93  GLVGL*QCLCSPIYFCRQITNSKIILRL 176
           GL+   Q +CSP      +  SK++ ++
Sbjct: 145 GLINNIQLMCSPKLLAFDLNTSKLLKQI 172


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 23   VSLTKTNEIKKKISETSKLTTMCWLGWAV 109
            V   KTNE   ++ +T KLT      W +
Sbjct: 1083 VETAKTNEEMWELIDTEKLTDRLPYPWTM 1111


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 4/16 (25%), Positives = 13/16 (81%)
 Frame = -3

Query: 166  IILLFVIWRQKYIGEQ 119
            ++++ + WR +Y+G++
Sbjct: 1628 VVIVALRWRSRYLGDR 1643


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 4/16 (25%), Positives = 13/16 (81%)
 Frame = -3

Query: 166  IILLFVIWRQKYIGEQ 119
            ++++ + WR +Y+G++
Sbjct: 1624 VVIVALRWRSRYLGDR 1639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,722
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)