Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d06
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.6  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +2

Query: 155 IMKDEWERNDAVDVSNGVSWSWEQYWSTVLHQ 250
           + KD + +     V     W W ++W  + HQ
Sbjct: 365 VTKDRFSQVVTEVVEANYGWCWRRFWGMIKHQ 396


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 240  FYTNTVC---RLCNFGSVFFMDFIRILLSQLWHYILL 341
            FY   +C    LC + S    D+ + ++   W+YI L
Sbjct: 1805 FYMGIMCLTTALCKYHSALLNDYRKSVIMSAWNYIKL 1841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,885
Number of Sequences: 5004
Number of extensions: 58155
Number of successful extensions: 163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)