Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d06
         (679 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC080527-1|AAH80527.1|   73|Homo sapiens TOR2A protein protein.        32   1.6  
BC062340-1|AAH62340.1|  247|Homo sapiens TOR2A protein protein.        32   1.6  
AY358180-1|AAQ88547.1|  321|Homo sapiens TOR2A protein.                32   1.6  
AL162426-11|CAI41186.1|  321|Homo sapiens torsin family 2, membe...    32   1.6  
BC044581-1|AAH44581.1|  523|Homo sapiens PKD2L2 protein protein.       32   2.2  
AF182034-1|AAF65622.1|  624|Homo sapiens polycystic kidney disea...    32   2.2  
AF118125-1|AAD46478.1|  609|Homo sapiens polycystin-2-like prote...    32   2.2  
AK074334-1|BAB85054.1|  301|Homo sapiens protein ( Homo sapiens ...    31   5.0  

>BC080527-1|AAH80527.1|   73|Homo sapiens TOR2A protein protein.
          Length = 73

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -3

Query: 524 LYAIAPFVP*IRHHV-HTILYSLSESVVEYLEVRFAFVL----FFPAMSNIYSSPAC 369
           L A+ PF+P  RHHV H +L  L++  +E  +     VL    FFP    ++SS  C
Sbjct: 6   LDAVVPFLPLQRHHVRHCVLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGC 62


>BC062340-1|AAH62340.1|  247|Homo sapiens TOR2A protein protein.
          Length = 247

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -3

Query: 524 LYAIAPFVP*IRHHV-HTILYSLSESVVEYLEVRFAFVL----FFPAMSNIYSSPAC 369
           L A+ PF+P  RHHV H +L  L++  +E  +     VL    FFP    ++SS  C
Sbjct: 180 LDAVVPFLPLQRHHVRHCVLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGC 236


>AY358180-1|AAQ88547.1|  321|Homo sapiens TOR2A protein.
          Length = 321

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -3

Query: 524 LYAIAPFVP*IRHHV-HTILYSLSESVVEYLEVRFAFVL----FFPAMSNIYSSPAC 369
           L A+ PF+P  RHHV H +L  L++  +E  +     VL    FFP    ++SS  C
Sbjct: 254 LDAVVPFLPLQRHHVRHCVLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGC 310


>AL162426-11|CAI41186.1|  321|Homo sapiens torsin family 2, member A
           protein.
          Length = 321

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -3

Query: 524 LYAIAPFVP*IRHHV-HTILYSLSESVVEYLEVRFAFVL----FFPAMSNIYSSPAC 369
           L A+ PF+P  RHHV H +L  L++  +E  +     VL    FFP    ++SS  C
Sbjct: 254 LDAVVPFLPLQRHHVRHCVLNELAQLGLEPRDEVVQAVLDSTTFFPEDEQLFSSNGC 310


>BC044581-1|AAH44581.1|  523|Homo sapiens PKD2L2 protein protein.
          Length = 523

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -1

Query: 532 FRVSTQLLRSFREFGITYTQFCIHYLNL*LNILKFVLLSFYSFPRCQIYIL 380
           F  +TQ ++  +EF   Y +   ++L L L +L FV +SF ++   QI++L
Sbjct: 294 FVFTTQEVKKIKEFKSAYFKSIWNWLELLLLLLCFVAVSFNTYYNVQIFLL 344


>AF182034-1|AAF65622.1|  624|Homo sapiens polycystic kidney
           disease-like 2 protein protein.
          Length = 624

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -1

Query: 532 FRVSTQLLRSFREFGITYTQFCIHYLNL*LNILKFVLLSFYSFPRCQIYIL 380
           F  +TQ ++  +EF   Y +   ++L L L +L FV +SF ++   QI++L
Sbjct: 294 FVFTTQEVKKIKEFKSAYFKSIWNWLELLLLLLCFVAVSFNTYYNVQIFLL 344


>AF118125-1|AAD46478.1|  609|Homo sapiens polycystin-2-like protein
           protein.
          Length = 609

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -1

Query: 532 FRVSTQLLRSFREFGITYTQFCIHYLNL*LNILKFVLLSFYSFPRCQIYIL 380
           F  +TQ ++  +EF   Y +   ++L L L +L FV +SF ++   QI++L
Sbjct: 294 FVFTTQEVKKIKEFKSAYFKSIWNWLELLLLLLCFVAVSFNTYYNVQIFLL 344


>AK074334-1|BAB85054.1|  301|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23754 fis, clone HEP17288. ).
          Length = 301

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 608 RLRVYVGAPRPWL*RHARAPAPSSSVP 528
           RLR  +G P  WL  HA  PAP +  P
Sbjct: 4   RLRAELGRPERWLLHHALPPAPEARKP 30


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,059,168
Number of Sequences: 237096
Number of extensions: 1986274
Number of successful extensions: 3948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3948
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)