Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d06
         (679 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X53992-1|CAA37939.1| 1645|Drosophila melanogaster betaH spectrin...    29   5.8  
AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA...    29   5.8  
AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB...    29   5.8  
AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC...    29   5.8  

>X53992-1|CAA37939.1| 1645|Drosophila melanogaster betaH spectrin
            protein.
          Length = 1645

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 362  YMYTLVKNIYLTSRERIKRKQNELQDIQLQIQ 457
            Y+   VKN Y   ++ +  +Q E+QD+  Q+Q
Sbjct: 1154 YLGNSVKNAYPAEKDNVNARQQEVQDMWQQVQ 1185


>AE014296-651|AAF47766.1| 4097|Drosophila melanogaster CG12008-PA,
            isoform A protein.
          Length = 4097

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 362  YMYTLVKNIYLTSRERIKRKQNELQDIQLQIQ 457
            Y+   VKN Y   ++ +  +Q E+QD+  Q+Q
Sbjct: 1141 YLGNSVKNAYPAEKDNVNARQQEVQDMWQQVQ 1172


>AE014296-650|AAS64958.1| 4118|Drosophila melanogaster CG12008-PB,
            isoform B protein.
          Length = 4118

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 362  YMYTLVKNIYLTSRERIKRKQNELQDIQLQIQ 457
            Y+   VKN Y   ++ +  +Q E+QD+  Q+Q
Sbjct: 1141 YLGNSVKNAYPAEKDNVNARQQEVQDMWQQVQ 1172


>AE014296-649|AAS64957.1| 4207|Drosophila melanogaster CG12008-PC,
            isoform C protein.
          Length = 4207

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 362  YMYTLVKNIYLTSRERIKRKQNELQDIQLQIQ 457
            Y+   VKN Y   ++ +  +Q E+QD+  Q+Q
Sbjct: 1141 YLGNSVKNAYPAEKDNVNARQQEVQDMWQQVQ 1172


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,119,462
Number of Sequences: 53049
Number of extensions: 612144
Number of successful extensions: 1636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)