Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d06
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine rece...    30   1.3  
U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine rece...    30   1.3  
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    30   1.3  
AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical...    30   1.7  
AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U80839-2|AAW88386.1|  346|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform b protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 535 AFRVSTQLLRSFREFGITYTQFCIHYLNL*LNILKFVLLSFYSFPRCQIY-ILHQRVHVN 359
           AF+  +Q+  SF    +T   F +H+  L  NIL  VL+S +  P    + IL  RV+VN
Sbjct: 127 AFKTLSQIAISFNR--MTCVIFPVHHFKLWQNILAPVLVSLFVLPLGVTWNILVSRVYVN 184


>U80839-1|AAB37913.3|  337|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 20, isoform a protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 535 AFRVSTQLLRSFREFGITYTQFCIHYLNL*LNILKFVLLSFYSFPRCQIY-ILHQRVHVN 359
           AF+  +Q+  SF    +T   F +H+  L  NIL  VL+S +  P    + IL  RV+VN
Sbjct: 127 AFKTLSQIAISFNR--MTCVIFPVHHFKLWQNILAPVLVSLFVLPLGVTWNILVSRVYVN 184


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
           protein B0511.12 protein.
          Length = 1634

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 248 QYGVPFMQFWISFFYGLYTHFTFTALALYFVKYVPTAIYMYTLVKNIYL 394
           +Y + F  F ++FF+GL++   FTA   YF + + + + +   V N YL
Sbjct: 474 RYDLIFSIFLVAFFFGLHSTSLFTATEPYFTRAI-SGVCVCLGVLNHYL 521


>AL117193-10|CAB60304.1|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5A.17 protein.
          Length = 337

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 208 FMELGAILEHGSTPIRCAVYAILDQFFLWTLYAFYFHSFGII 333
           F+++  +LE  +    C  Y +LDQFF  + Y F FHS  +I
Sbjct: 142 FLKIVFVLETEAAKT-CECYKLLDQFF--SFYRFSFHSLRLI 180


>AF025464-8|AAB71019.1|  714|Caenorhabditis elegans Hypothetical
           protein F53G2.1 protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 260 AHRIGVEPCSNIAPNSMKHHY*HL 189
           A+ + +E CSN  P+S+ H+Y HL
Sbjct: 615 ANDLLMENCSNYLPSSIAHYYKHL 638


>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 167 EWERN-DAVDVSNGVSWSWEQYWSTVLHQ--YGVPFMQFWISFFYGLYTHFTFTALALYF 337
           +W  +  AV  ++G S   + + +  +    +GV  +   ++ FYGLYT+F  +   L  
Sbjct: 621 QWASDLSAVTTADGSSAGNQHHITVAIEHAIFGVFVLSAKMAVFYGLYTYFVHSLFDLNI 680

Query: 338 VKYVPT 355
           V +VP+
Sbjct: 681 V-FVPS 685


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +2

Query: 167 EWERN-DAVDVSNGVSWSWEQYWSTVLHQ--YGVPFMQFWISFFYGLYTHFTFTALALYF 337
           +W  +  AV  ++G S   + + +  +    +GV  +   ++ FYGLYT+F  +   L  
Sbjct: 622 QWASDLSAVTTADGSSAGNQHHITVAIEHAIFGVFVLSAKMAVFYGLYTYFVHSLFDLNI 681

Query: 338 VKYVPT 355
           V +VP+
Sbjct: 682 V-FVPS 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,866
Number of Sequences: 27780
Number of extensions: 334409
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)