Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d06
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.29 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.29 
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 16/79 (20%), Positives = 33/79 (41%)
 Frame = +2

Query: 158 MKDEWERNDAVDVSNGVSWSWEQYWSTVLHQYGVPFMQFWISFFYGLYTHFTFTALALYF 337
           +K+ WER   + +S+G+       W     +        WI  ++ ++    +T   +YF
Sbjct: 184 VKEFWERR-TLQISDGIENIGSIRW-----ELAGTLAVVWIMCYFCIWKGVKWTGKVVYF 237

Query: 338 VKYVPTAIYMYTLVKNIYL 394
               P A+    L++ + L
Sbjct: 238 TSLFPYALLTILLIRGLTL 256


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 16/79 (20%), Positives = 33/79 (41%)
 Frame = +2

Query: 158 MKDEWERNDAVDVSNGVSWSWEQYWSTVLHQYGVPFMQFWISFFYGLYTHFTFTALALYF 337
           +K+ WER   + +S+G+       W     +        WI  ++ ++    +T   +YF
Sbjct: 237 VKEFWERR-TLQISDGIENIGSIRW-----ELAGTLAVVWIMCYFCIWKGVKWTGKVVYF 290

Query: 338 VKYVPTAIYMYTLVKNIYL 394
               P A+    L++ + L
Sbjct: 291 TSLFPYALLTILLIRGLTL 309


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -1

Query: 499 REFGITYTQFCIHY 458
           ++FG  + Q+C+H+
Sbjct: 12  KDFGTYFQQYCLHH 25


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 247 PIRCAVYAILDQFFLW 294
           P+ C V AI+  F LW
Sbjct: 217 PLGCPVNAIMGLFVLW 232


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +2

Query: 380 KNIYLTSRERIKRKQNELQDIQLQ 451
           +N+Y  + E + + +N+  D+Q +
Sbjct: 272 ENLYYVNTESLMKSENQGNDVQYE 295


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 287 FYGLYTHFTFTALALYFVKYVPTAIYM 367
           F G  TH     +   F+KY+PT + M
Sbjct: 322 FRGPRTHRMPQLIRKIFLKYLPTILMM 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,148
Number of Sequences: 438
Number of extensions: 4234
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)