Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29d05
(687 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DB77C3 Cluster: PREDICTED: similar to CG15735-PA... 219 5e-56
UniRef50_Q7QK61 Cluster: ENSANGP00000019468; n=3; Endopterygota|... 203 3e-51
UniRef50_Q9VYR0 Cluster: Protein LSM12 homolog A; n=1; Drosophil... 158 1e-37
UniRef50_Q3MHD2 Cluster: Protein LSM12 homolog; n=23; Euteleosto... 142 7e-33
UniRef50_Q9VT67 Cluster: Protein LSM12 homolog B; n=1; Drosophil... 100 3e-20
UniRef50_A7RHX7 Cluster: Predicted protein; n=1; Nematostella ve... 100 7e-20
UniRef50_Q6FKA9 Cluster: Similar to sp|P38828 Saccharomyces cere... 59 9e-08
UniRef50_Q5DC85 Cluster: SJCHGC02504 protein; n=1; Schistosoma j... 59 1e-07
UniRef50_A5K1W0 Cluster: Putative uncharacterized protein; n=5; ... 57 5e-07
UniRef50_P38828 Cluster: Protein LSM12; n=3; Saccharomycetaceae|... 57 5e-07
UniRef50_UPI0000587EBD Cluster: PREDICTED: similar to LSM12 homo... 56 1e-06
UniRef50_A7TGH5 Cluster: Putative uncharacterized protein; n=1; ... 49 1e-04
UniRef50_Q74Z66 Cluster: AGR340Wp; n=1; Eremothecium gossypii|Re... 48 2e-04
UniRef50_Q6CIS8 Cluster: Similar to sp|P38828 Saccharomyces cere... 46 9e-04
UniRef50_Q21541 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q55BQ9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.014
UniRef50_Q6CCA6 Cluster: Similar to sp|P38828 Saccharomyces cere... 38 0.23
UniRef50_A2X9H1 Cluster: Putative uncharacterized protein; n=3; ... 37 0.40
UniRef50_Q8TDI7 Cluster: Transmembrane channel-like protein 2; n... 36 0.70
UniRef50_P37608 Cluster: Lacticin-481/lactococcin-DR transport/p... 36 0.70
UniRef50_UPI0000510074 Cluster: COG1074: ATP-dependent exoDNAse ... 35 1.6
UniRef50_Q4V2D7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q3JR94 Cluster: Putative uncharacterized protein; n=14;... 35 1.6
UniRef50_Q5SN81 Cluster: Eukaryotic translation initiation facto... 35 1.6
UniRef50_A7Q714 Cluster: Chromosome chr5 scaffold_58, whole geno... 35 1.6
UniRef50_Q2NXC9 Cluster: Putative uncharacterized protein XOO429... 34 2.8
UniRef50_O85018 Cluster: ExiT; n=4; Corynebacterineae|Rep: ExiT ... 34 2.8
UniRef50_A4RBQ5 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_UPI00015B5308 Cluster: PREDICTED: similar to ubiquitin ... 33 4.9
UniRef50_A7C8H7 Cluster: Transcriptional regulator, MarR family;... 33 4.9
UniRef50_Q21605 Cluster: Putative uncharacterized protein; n=2; ... 33 4.9
UniRef50_Q8SRX9 Cluster: LRG1-LIKE NUCLEAR PROTEIN; n=1; Encepha... 33 4.9
UniRef50_UPI000023D17E Cluster: hypothetical protein FG04830.1; ... 33 6.5
UniRef50_Q08XC1 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_Q54NA9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_Q0UNM0 Cluster: Predicted protein; n=1; Phaeosphaeria n... 33 6.5
UniRef50_A1CEV7 Cluster: Putative uncharacterized protein; n=3; ... 33 6.5
UniRef50_Q14NR0 Cluster: Hypothetical transmembrane protein; n=1... 33 8.6
UniRef50_A0BC77 Cluster: Chromosome undetermined scaffold_10, wh... 33 8.6
>UniRef50_UPI0000DB77C3 Cluster: PREDICTED: similar to CG15735-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG15735-PA
- Apis mellifera
Length = 198
Score = 219 bits (535), Expect = 5e-56
Identities = 111/184 (60%), Positives = 139/184 (75%), Gaps = 1/184 (0%)
Frame = +2
Query: 86 AVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSL 265
A +DCF+IGS VA +TCY E IEGEVLAFDPQTKMLILKC SSSG P +DV+IVNLSL
Sbjct: 2 AGANDCFSIGSTVACKTCYKEEIEGEVLAFDPQTKMLILKCPSSSGAPALNDVHIVNLSL 61
Query: 266 VSDVQIKKEVS-TVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIA 442
VS+VQ+K+EVS T EPPQSLNL +LN RVRN IE K++LV AL A + PEGQ+LF I+
Sbjct: 62 VSEVQVKREVSPTTSEPPQSLNLQKLNKRVRNQIEEKKKLVMALQAGVSPEGQKLFSTIS 121
Query: 443 RVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRDRPTP 622
+ I +++W G +I V++N V I PPYKVD+V G +S +Y ++KK VE+H +D T
Sbjct: 122 KTIPEITWNGANIVVFDN----VTIRPPYKVDNVHGNTESGAYKHVKKVVEKHIKD--TE 175
Query: 623 APQQ 634
A QQ
Sbjct: 176 ASQQ 179
>UniRef50_Q7QK61 Cluster: ENSANGP00000019468; n=3;
Endopterygota|Rep: ENSANGP00000019468 - Anopheles
gambiae str. PEST
Length = 213
Score = 203 bits (496), Expect = 3e-51
Identities = 106/181 (58%), Positives = 130/181 (71%)
Frame = +2
Query: 80 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 259
M+ +V DCF+IGS V TCYN NIEGEVLAFD QTKMLILKC S+S + K +DV IVNL
Sbjct: 7 MAGLVQDCFSIGSTVECTTCYNANIEGEVLAFDQQTKMLILKCPSASKSAKLNDVYIVNL 66
Query: 260 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 439
++ SDVQ+KKEV VPE P SLNL RL+TR RN +E KR +SALSA + PEGQ L+MAI
Sbjct: 67 AMCSDVQVKKEVCIVPEQPLSLNLERLSTRARNQVEQKRLQISALSAGVSPEGQNLYMAI 126
Query: 440 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRDRPT 619
AR I V+W+G +I V + V ITPPYKVD+V D + +Y+KK V + R RP+
Sbjct: 127 ARTIKQVTWSGPNIVVCKD----VTITPPYKVDNV-NSSDQRQLSYVKKIVIQ--RTRPS 179
Query: 620 P 622
P
Sbjct: 180 P 180
>UniRef50_Q9VYR0 Cluster: Protein LSM12 homolog A; n=1; Drosophila
melanogaster|Rep: Protein LSM12 homolog A - Drosophila
melanogaster (Fruit fly)
Length = 217
Score = 158 bits (383), Expect = 1e-37
Identities = 79/183 (43%), Positives = 124/183 (67%), Gaps = 3/183 (1%)
Frame = +2
Query: 92 VSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVS 271
V+DCF+IGS V TC+NE +EGEVLAFD TKMLILKC+S S + D+ +NLSL S
Sbjct: 12 VNDCFSIGSTVVCTTCFNEEVEGEVLAFDHNTKMLILKCRSKS-TEELSDIYAMNLSLCS 70
Query: 272 DVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARV- 448
+VQ+ KE + + PQ LNL ++ R+R ++E ++ + + +A + PE Q L+ AIA+
Sbjct: 71 NVQVIKECNGNFDDPQKLNLEQVKMRLRKTVERRQDYLKSKNADVSPEAQELYRAIAKQY 130
Query: 449 -IDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQ-SYNYIKKFVERHWRDRPTP 622
++VSW G +I++ N +V I+PPY+VD+V+ +++ S NYIK+ +++ + RP+P
Sbjct: 131 GYNEVSWQGLNIQILN----EVTISPPYRVDNVVSSSNNETSCNYIKRIIKQFFNTRPSP 186
Query: 623 APQ 631
P+
Sbjct: 187 VPE 189
>UniRef50_Q3MHD2 Cluster: Protein LSM12 homolog; n=23;
Euteleostomi|Rep: Protein LSM12 homolog - Homo sapiens
(Human)
Length = 195
Score = 142 bits (344), Expect = 7e-33
Identities = 72/177 (40%), Positives = 113/177 (63%)
Frame = +2
Query: 80 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 259
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML LKC SSSG P D+ ++NL
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60
Query: 260 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 439
VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF I
Sbjct: 61 QYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120
Query: 440 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 610
+ I D W ++I V + +V+ITPPY+V++ G K+ + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172
>UniRef50_Q9VT67 Cluster: Protein LSM12 homolog B; n=1; Drosophila
melanogaster|Rep: Protein LSM12 homolog B - Drosophila
melanogaster (Fruit fly)
Length = 186
Score = 100 bits (240), Expect = 3e-20
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 7/158 (4%)
Frame = +2
Query: 92 VSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRH---DVNIVNLS 262
++ CFT+GSIV +TC+ +NI GEV+AFD KMLI+KC SS+G +V IVNLS
Sbjct: 4 LAPCFTVGSIVRCKTCFGDNISGEVVAFDLGVKMLIMKCPSSNGGGDEQTTCNVTIVNLS 63
Query: 263 LVSDVQIKKEVSTVPE--PPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMA 436
L D++I KE E P+ ++L + R R + E++ + P GQ LF
Sbjct: 64 LCMDIEIVKEAIPPAEVQQPEPIDLPMIRERYRYATEHRTLSCRSYHPNASPFGQALFRL 123
Query: 437 IARVIDD--VSWAGQSIRVYNNKIHQVMITPPYKVDDV 544
+ + D + W + +V N + QV+I PY +++
Sbjct: 124 LVKRFGDPAIIWQNKGDQVAINILRQVVIDAPYATENI 161
>UniRef50_A7RHX7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 190
Score = 99.5 bits (237), Expect = 7e-20
Identities = 53/169 (31%), Positives = 96/169 (56%), Gaps = 2/169 (1%)
Frame = +2
Query: 113 GSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKR--HDVNIVNLSLVSDVQIK 286
GS+VA T + E IEGEV+AFD +K +++K + + ++ DV ++N++ + I
Sbjct: 19 GSLVACVTRFGEKIEGEVVAFDYASKFIVIKTPTETKGARKGNQDVRMLNMTCLQKFNII 78
Query: 287 KEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSW 466
S P L+L +++ R++ + K + + + + PEGQ+LF IA+ ++SW
Sbjct: 79 DMGSATQNPLPPLDLDKIDKRIKANKLEKSQAIGRVGVGVTPEGQKLFDTIAKTFSEISW 138
Query: 467 AGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRDR 613
+ I V + +V I PPYKV ++ G D +S+ YIK+ V++H+ +
Sbjct: 139 KDKDIVV----MDRVTIVPPYKVGNMSGH-DERSFTYIKEIVKKHYEQQ 182
>UniRef50_Q6FKA9 Cluster: Similar to sp|P38828 Saccharomyces
cerevisiae YHR121w; n=1; Candida glabrata|Rep: Similar
to sp|P38828 Saccharomyces cerevisiae YHR121w - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 185
Score = 59.3 bits (137), Expect = 9e-08
Identities = 38/173 (21%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Frame = +2
Query: 110 IGSIVATRTCYNENIEGEVLAFDPQTKMLILKC-QSSSGNPKRHDVN---IVNLSLVSDV 277
+G V ++ I+G++ +++ + L ++ + ++ NP + I +L ++ D
Sbjct: 9 LGFRVKITNLLHDVIDGKIYSYNSMSNTLTIQLPKKNNANPSFKIIKCSFIKSLEVIGDK 68
Query: 278 QIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDD 457
P ++++ R+ + IE +R + EGQ +F A+++ + D
Sbjct: 69 PPYNSFKRQQIKPSTVSVERVQKLLNTRIEEAKREADMKKRGITAEGQYIFDALSKTVSD 128
Query: 458 VSWAGQSIRVYNNKIHQVMITPPYKVDDV--IGEKDSQSYNYIKKFVERHWRD 610
W G++I V + ++I PYK ++V + +QS N I K +ER W++
Sbjct: 129 TRWDGKNIVV----LDDIIIASPYKQENVKSLNTHGNQSLNLIHKILERSWKE 177
>UniRef50_Q5DC85 Cluster: SJCHGC02504 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02504 protein - Schistosoma
japonicum (Blood fluke)
Length = 181
Score = 58.8 bits (136), Expect = 1e-07
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Frame = +2
Query: 113 GSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKE 292
GS + T C + I+G+VL D K++IL+ SS G P D+ I+ + D++ K+
Sbjct: 10 GSTI-TAYCSDTFIQGDVLCVDASKKLIILQKASSIGRPDTCDLLILRADYLRDLKSIKQ 68
Query: 293 VSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAG 472
S P P+ LN+ ++ R+R + ++ + S + + + L + + V W
Sbjct: 69 GSP-PACPE-LNIEKIIERIRVNERIQKEKLKFYSPDVPVDARELAEHL-EMFFSVVWDK 125
Query: 473 QSIRVYNNKIHQVMITPPYKVDDVIGEKDSQ----SYNYIKKFVERHWRDRP 616
+I V + I I+PPYK ++V D+Q Y++K V R +++RP
Sbjct: 126 PNIIVMEHTI----ISPPYKENNVFCSSDTQQAKSQTEYVQKVVSRFYQERP 173
>UniRef50_A5K1W0 Cluster: Putative uncharacterized protein; n=5;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 178
Score = 56.8 bits (131), Expect = 5e-07
Identities = 31/150 (20%), Positives = 72/150 (48%)
Frame = +2
Query: 113 GSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKE 292
G +V+T+T + EGE+ ++ K +I+K + +G + I+ ++ D++I +
Sbjct: 13 GHVVSTKTREGHSFEGELYCYETNLKFIIIKEEGKNGTANFY---IIKTDIIVDIEIVRR 69
Query: 293 VSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAG 472
+ + +P + + + ++ + + + + + E Q LF I + D +W+
Sbjct: 70 IKILFDPLPQIERSLIEKIEKKALTDFESVKARIGIGVTQEAQELFDFIWKTHPDCAWSN 129
Query: 473 QSIRVYNNKIHQVMITPPYKVDDVIGEKDS 562
+ I V N +V I PPY D+ + + ++
Sbjct: 130 KDILVLNG---EVRIKPPYGPDNCVAKNEN 156
>UniRef50_P38828 Cluster: Protein LSM12; n=3;
Saccharomycetaceae|Rep: Protein LSM12 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 187
Score = 56.8 bits (131), Expect = 5e-07
Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Frame = +2
Query: 107 TIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVN----IVNLSLVSD 274
T+G + + EG + +F+ L ++ + +P+ V I +L ++ D
Sbjct: 8 TLGFRIKVTNVLDVVTEGRLYSFNSSNNTLTIQTTKKNQSPQNFKVIKCTFIKHLEVIGD 67
Query: 275 VQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVID 454
P +N+ R+ ++ S+ ++ + EGQ +F I + I
Sbjct: 68 KPSFNSFKKQQIKPSYVNVERVEKLLKESVIASKKKELLRGKGVSAEGQFIFDQIFKTIG 127
Query: 455 DVSWAGQSIRVYNNKIHQVMITPPYKVDD--VIGEKDSQSYNYIKKFVERHW 604
D W + I + ++ V + PPYKV+D V+ E +QS I++ VER W
Sbjct: 128 DTKWVAKDIIILDD----VKVQPPYKVEDIKVLHEGSNQSITLIQRIVERSW 175
>UniRef50_UPI0000587EBD Cluster: PREDICTED: similar to LSM12 homolog
(S. cerevisiae), partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to LSM12 homolog (S.
cerevisiae), partial - Strongylocentrotus purpuratus
Length = 125
Score = 55.6 bits (128), Expect = 1e-06
Identities = 34/109 (31%), Positives = 54/109 (49%)
Frame = +2
Query: 203 KCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRL 382
K +SS D+ IVNL+LVSD Q+K E + P P SL+ ++L R +I K L
Sbjct: 4 KPPTSSERKNLCDICIVNLNLVSDFQVKHENAEPPREPPSLDTNKLKRRTDENISEKMML 63
Query: 383 VSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPY 529
+ S + +G +L+ I + + W + + N +H + PPY
Sbjct: 64 IQLNSKGISKQGIQLYQTIKKTL-KCRWVEDKM-IVNEDVH---VIPPY 107
>UniRef50_A7TGH5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 192
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +2
Query: 314 PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYN 493
P +NL R+ + N++ + + + +GQ +F A+ + D W+G++I V
Sbjct: 80 PSFVNLDRVQKSLDNTLVEVTKRDVLVGKGVSKQGQAIFDALYKTFSDTRWSGKNIIV-- 137
Query: 494 NKIHQVMITPPYKVDDV--IGEKDSQSYNYIKKFVERHW 604
+ V + P YK+++V +G+ ++ IKK VER W
Sbjct: 138 --LDDVQLEPAYKLNNVKPLGDVKPETVEMIKKIVERTW 174
>UniRef50_Q74Z66 Cluster: AGR340Wp; n=1; Eremothecium gossypii|Rep:
AGR340Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 179
Score = 48.0 bits (109), Expect = 2e-04
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 6/157 (3%)
Frame = +2
Query: 155 EGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPE------PP 316
+G++ A+D L L C G+ ++ + + +++ E T P P
Sbjct: 24 QGKIYAYDSGNHTLTLLC-GRKGHTA--SFKVIKTTFIKSLEVVGEKPTSPGIKRDTLKP 80
Query: 317 QSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYNN 496
+N+ R+ +R S E + R + EG+ +F ++AR + W G I V
Sbjct: 81 AGVNIERVVATLR-SREAEHRTHDSGGGAATAEGRAVFESVARTVAMTRWDGDRIVV--- 136
Query: 497 KIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWR 607
+ V I PPY DV GE + S + K VE WR
Sbjct: 137 -LDAVEIAPPYTAADVRGE--AASCELVAKIVEGTWR 170
>UniRef50_Q6CIS8 Cluster: Similar to sp|P38828 Saccharomyces
cerevisiae YHR121w singleton; n=1; Kluyveromyces
lactis|Rep: Similar to sp|P38828 Saccharomyces
cerevisiae YHR121w singleton - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 185
Score = 46.0 bits (104), Expect = 9e-04
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +2
Query: 314 PQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYN 493
P ++L R+ + +I+ + ++ + EGQ +F I + I D+ W G+SI V
Sbjct: 80 PSYVDLDRVKNALAKTIDTAAKKEMSIGKNVSYEGQFIFDLIHKTISDIVWKGKSIVV-- 137
Query: 494 NKIHQVMITPPYKVDDV---IGEKDSQSYNYIKKFVERHW 604
+ ++ I PPY++ + G D +S I K VE W
Sbjct: 138 --LDELEINPPYQLGSIKPLQGRTDVKSKELIDKIVESAW 175
>UniRef50_Q21541 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 209
Score = 44.8 bits (101), Expect = 0.002
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Frame = +2
Query: 110 IGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKR----HDVNIVNLSLVSDV 277
IG+ V T + G V++FD K+L+L + + N + ++ N+ ++S+
Sbjct: 13 IGACVEIETTNGLSARGVVISFDTTRKVLVLDTKEMAINKPMIRIFNSEHLKNIKVLSEA 72
Query: 278 QIKKEVSTVPEPPQSLNLHRLN-TRVRNSIENKR-RLVSAL--SACLDPEGQRLFMAIAR 445
+ E + Q + +N TR ++ L L S + GQ+ ++ + R
Sbjct: 73 LEESEKFARAKTEQFAQNNPVNGTRTTERLDKTLGELTPNLMKSPAISIRGQQAYLQLKR 132
Query: 446 VIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYN 574
I D W G+ IRV + V++ PY+V DV + + ++
Sbjct: 133 TIPDTCWCGEDIRV----LGLVLVHKPYEVSDVTKDAKATGFD 171
>UniRef50_Q55BQ9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 218
Score = 41.9 bits (94), Expect = 0.014
Identities = 23/92 (25%), Positives = 48/92 (52%)
Frame = +2
Query: 320 SLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYNNK 499
SLN+ + + I+ + + + PE Q +F +++R + W+G++I V N
Sbjct: 124 SLNVQLIIKKQDEVIKKAAQKAMKIGVGVTPEAQEIFNSLSRTLP-CDWSGENIIVLN-- 180
Query: 500 IHQVMITPPYKVDDVIGEKDSQSYNYIKKFVE 595
+V I+ PY +++ G ++ +S +KK +E
Sbjct: 181 --EVKISSPYNIENCTGPENCKSIERVKKVLE 210
>UniRef50_Q6CCA6 Cluster: Similar to sp|P38828 Saccharomyces
cerevisiae YHR121w; n=1; Yarrowia lipolytica|Rep:
Similar to sp|P38828 Saccharomyces cerevisiae YHR121w -
Yarrowia lipolytica (Candida lipolytica)
Length = 215
Score = 37.9 bits (84), Expect = 0.23
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +2
Query: 311 PPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVY 490
P ++L + R + + + R + + +GQ ++ AIA+ + W G+SI
Sbjct: 112 PVGFVDLDAVKRREGDVVNQEMRKQANKGVGVTEQGQEIYDAIAKTLP-CRWDGKSILA- 169
Query: 491 NNKIHQVMITPPYKVDDVIGEK-DSQSYNYIKKFVERHWR 607
+ +V I PPY K +SQ+ ++KK +E W+
Sbjct: 170 ---VEEVQIDPPYNTLSCKANKPNSQALAHVKKIIEATWK 206
>UniRef50_A2X9H1 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 197
Score = 37.1 bits (82), Expect = 0.40
Identities = 33/177 (18%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Frame = +2
Query: 104 FTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSS------------GNPKRHDVN 247
F IG +++ +T E EG++++FD T +L++ S S +R +V
Sbjct: 8 FAIGVLISVKTTLGEEFEGQIVSFDRPTNLLVIHILSKSLPIRSQEGVGRAERGERRNVR 67
Query: 248 IVNLSLVSDVQIKKEVSTVPEPPQS-LNLHRLNTRVRNSIENKRRLVSALSACLDPEGQR 424
++ + + + + + +P L+L ++ R ++ + + PE Q
Sbjct: 68 VLKANYIREFSVVGKADDPLDPAGCVLDLAAIHAREEAALRQAEIEAERIGVGVTPEAQS 127
Query: 425 LFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVE 595
+F A+++ + Q + + +V + PY ++V G S + +KK ++
Sbjct: 128 IFDALSKTYILLRLPVQWDKTDIVVMKEVRVCNPYLPENVSG-GTSAANERVKKVLD 183
>UniRef50_Q8TDI7 Cluster: Transmembrane channel-like protein 2;
n=61; Euteleostomi|Rep: Transmembrane channel-like
protein 2 - Homo sapiens (Human)
Length = 906
Score = 36.3 bits (80), Expect = 0.70
Identities = 26/87 (29%), Positives = 36/87 (41%)
Frame = +1
Query: 49 LKQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQS 228
+K + S H G R G R S+ A + RRG + S P R+
Sbjct: 16 VKGRVKSGSPHTGDRLGR---RSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRK 72
Query: 229 ETARRQHREPVPRQRRSNQEGSIHGTR 309
+T RR+HRE + Q R E + G R
Sbjct: 73 QTGRRRHREELGEQERGEAERTCEGRR 99
>UniRef50_P37608 Cluster: Lacticin-481/lactococcin-DR
transport/processing ATP-binding protein lcnDR3; n=1;
Lactococcus lactis subsp. lactis|Rep:
Lacticin-481/lactococcin-DR transport/processing
ATP-binding protein lcnDR3 - Lactococcus lactis subsp.
lactis (Streptococcus lactis)
Length = 691
Score = 36.3 bits (80), Expect = 0.70
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 368 NKRRLVSALSACLDPEGQRLFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVI 547
N+ LVS + G LF++ I DV + + +Y NKI ++I P ++D++
Sbjct: 398 NQGNLVSIPDLIIFQSGISLFVSAVNQIQDVMFEISRLSIYGNKISDLLIENPQRIDNI- 456
Query: 548 GEKDSQSYNYIK 583
EK S + +K
Sbjct: 457 -EKHSNNAIILK 467
>UniRef50_UPI0000510074 Cluster: COG1074: ATP-dependent exoDNAse
(exonuclease V) beta subunit (contains helicase and
exonuclease domains); n=1; Brevibacterium linens
BL2|Rep: COG1074: ATP-dependent exoDNAse (exonuclease V)
beta subunit (contains helicase and exonuclease domains)
- Brevibacterium linens BL2
Length = 1128
Score = 35.1 bits (77), Expect = 1.6
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 302 VPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLD--PEGQRLFMAIARVIDDVSWAG 472
V + ++L+L R N RVR SI ++ RL+ A+ D P +FM +A ++D+V W G
Sbjct: 353 VDQEVRALDLLRTNERVRASIASRYRLL-AVDEFQDSSPIQLAIFMELADLVDEVIWVG 410
>UniRef50_Q4V2D7 Cluster: Putative uncharacterized protein; n=1;
Burkholderia mallei|Rep: Putative uncharacterized
protein - Burkholderia mallei (Pseudomonas mallei)
Length = 452
Score = 35.1 bits (77), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +1
Query: 61 RLSTRKHVGRRFGLLHDRQYSRHAHLLQR-KHRRRGPSFRSSNKNVDSEMPIVQRQSETA 237
R S + RR HDR+ RHA L + + + ++ + ++P + Q E
Sbjct: 2 RSSAEIEIERRERRRHDRRGERHAKLRRALRDLQHEAGMQALGRREKRDVPDSEVQPEGD 61
Query: 238 RRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHK 348
R Q +P QRR + G A P+ E Q +H+
Sbjct: 62 REQRADPGRAQRRMKEAGRRRRADADPLSE-QQAQHQ 97
>UniRef50_Q3JR94 Cluster: Putative uncharacterized protein; n=14;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 1710b)
Length = 1040
Score = 35.1 bits (77), Expect = 1.6
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 154 RRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQE 288
R R + R++ + S M Q+ETA R+HR PVP QRR+ ++
Sbjct: 34 RERASAMRAARRPESSAMA----QAETADRRHRRPVPPQRRARRQ 74
>UniRef50_Q5SN81 Cluster: Eukaryotic translation initiation factor 3
subunit 10-like; n=5; Eukaryota|Rep: Eukaryotic
translation initiation factor 3 subunit 10-like - Oryza
sativa subsp. japonica (Rice)
Length = 1350
Score = 35.1 bits (77), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 121 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSN 282
SRH R HRR G RS ++ ++ R+ A R R+P P +RRS+
Sbjct: 5 SRHRSSSHRSHRRGGSVERSESEGDEAGGGAGAREEAAAARVSRDPEPERRRSS 58
>UniRef50_A7Q714 Cluster: Chromosome chr5 scaffold_58, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_58, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 2638
Score = 35.1 bits (77), Expect = 1.6
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 251 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKR-RLVSALSACLDPEGQRL 427
VN+SL + +K + E S +HR++ +RN +E+ R SAL+ACL G
Sbjct: 1743 VNISLAALKLLKLLPGDIMESQLSSIIHRISNFLRNRLESVRDDARSALAACLKELGLEY 1802
Query: 428 FMAIARVIDDVSWAGQSIRVYNNKIHQVM 514
I V+ G + V +H ++
Sbjct: 1803 LQFIVSVLRATLKRGYELHVLGYTLHFIL 1831
>UniRef50_Q2NXC9 Cluster: Putative uncharacterized protein XOO4293;
n=1; Xanthomonas oryzae pv. oryzae MAFF 311018|Rep:
Putative uncharacterized protein XOO4293 - Xanthomonas
oryzae pv. oryzae (strain MAFF 311018)
Length = 236
Score = 34.3 bits (75), Expect = 2.8
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = +1
Query: 52 KQKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQSE 231
+ ++ + ++H+ +R GL R R QR HRR+ PS R V R+++
Sbjct: 135 RTRQRALQRHLRKRVGLAPGRD--RPGRRRQRHHRRQHPSARRQRDRAAGATGRVGRRAQ 192
Query: 232 TARRQHREPVPRQRRSNQ 285
ARR +R R+S+Q
Sbjct: 193 AARR-YRPEAALARQSDQ 209
>UniRef50_O85018 Cluster: ExiT; n=4; Corynebacterineae|Rep: ExiT -
Mycobacterium smegmatis
Length = 1122
Score = 34.3 bits (75), Expect = 2.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 154 RRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ 285
RRRGP SE P+V+R++ RR E PR RR+++
Sbjct: 295 RRRGPPVGPQRNTRGSEKPVVRRRARRIRRGTHERRPRCRRTHR 338
>UniRef50_A4RBQ5 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 2547
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 36 IHYSIETKTFINP*TCRPSFRTASRSAV*SPRAPVTTKTSKER 164
I Y+ T P T +PS TA+RSA SP PV T+T++ R
Sbjct: 927 ITYAFHTSPSSQPRTPKPSSATATRSA--SPLVPVATRTAQRR 967
>UniRef50_UPI00015B5308 Cluster: PREDICTED: similar to ubiquitin
conjugating enzyme 7 interacting protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to ubiquitin
conjugating enzyme 7 interacting protein - Nasonia
vitripennis
Length = 1458
Score = 33.5 bits (73), Expect = 4.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 106 HDRQYSRHAHLLQRKHRRRGPSFR--SSNKNVDSEMPIVQRQS----ETARRQHREPVPR 267
H + H H L R+H+RRG S SS+ +VD+ +S +R + + R
Sbjct: 65 HQHRRRSHRHQLFRRHKRRGSSSSSGSSSSSVDTFYSTATVRSFAFHSGTKRDAADALLR 124
Query: 268 QRRSNQEGSIHGTRAPPIIELAQIEHK 348
R S G G AP ++L + + +
Sbjct: 125 HRDSRSNGPAVGPFAPGAVKLVEKQRR 151
>UniRef50_A7C8H7 Cluster: Transcriptional regulator, MarR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, MarR
family - Ralstonia pickettii 12D
Length = 321
Score = 33.5 bits (73), Expect = 4.9
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +1
Query: 58 KRLSTRKHVGR---RFGLLHDRQYSRHAHLLQRKHRRRGPSFRS----SNKNVDSEMPIV 216
+RL R+H +F ++H R H LL R H RR + + SN + S+
Sbjct: 98 ERLQRRRHADGSIDKFRVIHARGKIFHVWLLLRVHVRRSGNISARTSYSNSYIMSKRATA 157
Query: 217 QRQSETARRQHREPVPRQRRSNQEG 291
+ ++T+R P P Q + +EG
Sbjct: 158 GKDNDTSRNAPSIPEPGQGKRGEEG 182
>UniRef50_Q21605 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 828
Score = 33.5 bits (73), Expect = 4.9
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +1
Query: 139 LQRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQ 285
+ + +RRG +N S+ Q+Q++ AR+QH + + +Q++SNQ
Sbjct: 129 MMQHQQRRGNQSGQQQQNQPSQQNNQQQQNQGARQQHPQQMQQQQQSNQ 177
>UniRef50_Q8SRX9 Cluster: LRG1-LIKE NUCLEAR PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: LRG1-LIKE NUCLEAR PROTEIN
- Encephalitozoon cuniculi
Length = 287
Score = 33.5 bits (73), Expect = 4.9
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +2
Query: 347 RVRNSIENKRRLVSALSACLD-----PEGQRLFMAIARVIDDVSWAGQSIRVYNNK-IHQ 508
RVRNSI + V A+++C+D E +RL + VID + + +R Y+ I +
Sbjct: 113 RVRNSITTIKECVKAINSCVDRNLSYSEARRLLIRDFNVIDLTTAFKEILREYSTTIIPE 172
Query: 509 VMITPPYKVDDVIGEKD 559
+I +K+ V E+D
Sbjct: 173 SLIDTMFKIAKVENEED 189
>UniRef50_UPI000023D17E Cluster: hypothetical protein FG04830.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG04830.1 - Gibberella zeae PH-1
Length = 641
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 226 SETARRQ-----HREPVPRQRRSNQEGSIHGTRAPPIIEL 330
S ARRQ H P R+RR+N +GS+ R+PP EL
Sbjct: 34 SYCARRQKPHDCHYSPQVRRRRANHQGSVSSLRSPPASEL 73
>UniRef50_Q08XC1 Cluster: Putative uncharacterized protein; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Putative
uncharacterized protein - Stigmatella aurantiaca DW4/3-1
Length = 569
Score = 33.1 bits (72), Expect = 6.5
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 157 RRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTR 309
RR R + + +E+P V RQ + A+ + R+ VP+Q ++++G +HG R
Sbjct: 11 RRPLHGRRARRGGPAEVPRVLRQGDRAQPELRQHVPQQ--AHRDGQVHGAR 59
>UniRef50_Q54NA9 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 923
Score = 33.1 bits (72), Expect = 6.5
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +2
Query: 458 VSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKF 589
+SW +S + NNKI+Q ITP ++D EKD++ +N K+F
Sbjct: 4 LSWLFRSTQNKNNKINQ-NITPNNIINDSEDEKDNEKHNDKKEF 46
>UniRef50_Q0UNM0 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 282
Score = 33.1 bits (72), Expect = 6.5
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 142 QRKHRRRGPSFRSSNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAP 315
+R HRR G N N + + + + AR HR VPR R S E S AP
Sbjct: 6 ERFHRRGGIGDSHRNGNACTNAGVNRHRPPDARGAHRARVPRHRPSRTESSRAPANAP 63
>UniRef50_A1CEV7 Cluster: Putative uncharacterized protein; n=3;
Trichocomaceae|Rep: Putative uncharacterized protein -
Aspergillus clavatus
Length = 883
Score = 33.1 bits (72), Expect = 6.5
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 160 RGPSFRSSNKNV-DSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPI 321
R SF+++ + + DSE R S++ RRQ R PR RRS++ S G+ P +
Sbjct: 141 RAESFQTAREMISDSETITPYRSSQSLRRQRRHQ-PRTRRSSRSNSPAGSSNPSL 194
>UniRef50_Q14NR0 Cluster: Hypothetical transmembrane protein; n=1;
Spiroplasma citri|Rep: Hypothetical transmembrane
protein - Spiroplasma citri
Length = 405
Score = 32.7 bits (71), Expect = 8.6
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -1
Query: 573 LYDWESFSPMTSSTLYGGVIITWCILLLYTRMLCPAQDTSSITLAIAMNSLCPSGSRHAD 394
L W+ M +Y VIIT+ IL + R +++ S TLA +G + A+
Sbjct: 10 LVGWQYLVSMLFWIIYTAVIITFLILFINERDRINSENNVSKTLA-----EIAAGKKSAE 64
Query: 393 NA-DTNLRLFSIEFLTLVFNLCKFNDWGGSGTV 298
+T L SI + + F+L FN +G V
Sbjct: 65 QVQETYKNLMSITYPLIDFSLLSFNFFGEKNNV 97
>UniRef50_A0BC77 Cluster: Chromosome undetermined scaffold_10, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_10,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 177
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 419 QRLFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVER 598
Q+LF + ++ DV W Q I + + I I+PPYK +++ GE + ++K V++
Sbjct: 117 QQLFDHLQKLYRDVDWKDQEIIIPSISIR---ISPPYKSNNISGE-NKLGVERLRKIVDK 172
Query: 599 H 601
+
Sbjct: 173 Y 173
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,345,618
Number of Sequences: 1657284
Number of extensions: 15193718
Number of successful extensions: 45200
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 43268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45123
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -