Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29d05
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.1
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 1.9
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 27 3.4
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.4
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.9
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 7.8
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 25 7.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 7.8
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 527 YKVDDVIGEKDSQSYNYIKKFVE 595
Y VD V+ + ++Q+Y ++KKF E
Sbjct: 67 YPVDGVVPKHETQAYEFLKKFPE 89
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 123 TILPIVKQSETTADMFTG**TFLFQLNNVWLYF 25
TI P K + A T +F+F L ++WLYF
Sbjct: 475 TITPATKSDKGWAGFLTFAFSFVFLLFSIWLYF 507
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 55 QKRLSTRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQS 228
++R S+ + RR L R Y+RH + + RR S + + +P+V R S
Sbjct: 229 ERRRSSNESYSRRSELPR-RDYNRHDERERYSYHRRRERSNSPSYTKNESIPVVDRDS 285
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 178 SSNKNVDSEMPIVQRQSETARR 243
S++K D+E+P+V+ + E AR+
Sbjct: 518 SASKTTDTEIPLVKNEDENARK 539
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 176 DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVR 355
+P T + + C+ SG+ + + L L ++ + VST P SLN R N+ V+
Sbjct: 513 EPVTSVALGDCEVVSGS----EDGKIYLWLFNNAPNESPVSTQSVPISSLNGQRSNSSVQ 568
Query: 356 NSIENKRRLVSALS 397
++ + S+LS
Sbjct: 569 RALSSVPNYSSSLS 582
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 453 SITLAIAMNSLCPSGSRHADNADTNLRLFSIEFLTLVFNLCKFNDWGGSGTVDTSF 286
SI + +++ S+ ADN++TNL F+ + L F+ G G+ D +
Sbjct: 856 SINSGASADAVSSGISKKADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRY 911
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 181 SNKNVDSEMPIVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHK 348
S+ ++D V +++ EP+ +++R NQ+ + RA + ELA E +
Sbjct: 173 SSNDIDDGFQTVTSSRSYGKKKSTEPLTKRQRQNQQKKL---RAKEMQELADEEQR 225
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 501 ILLLYTRMLCPAQDTSSITLAIAMNSLCPSGSRHADNADTNL-RLFSIEFLTLVFNLCKF 325
+LLL RM + ++++L ++S C G+ D A + + F + L+FN
Sbjct: 618 LLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDEAKRYMSKNFQPDKRALLFNPRTA 677
Query: 324 ND 319
ND
Sbjct: 678 ND 679
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 211 IVQRQSETARRQHREPVPRQRRSNQEGSIHGTRAPPI 321
+ Q Q + + P P R QE S++GT++ PI
Sbjct: 394 VSQSQPASPNLRFNMPAPLATRFLQEHSLNGTKSAPI 430
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 121 SRHAHLLQRKHRRR-GPSFRSSNKNVDSEMPIVQRQSETARRQHREPVP 264
SR + +R RR P +RS +++ D + +R HR P P
Sbjct: 125 SRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSPKRNHRSPSP 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,653
Number of Sequences: 5004
Number of extensions: 63868
Number of successful extensions: 196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -