Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d04
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NS55 Cluster: Pitpnm2 protein; n=7; Eutheria|Rep: Pit...    35   1.6  
UniRef50_Q486R3 Cluster: Sensor protein; n=1; Colwellia psychrer...    34   2.8  
UniRef50_Q8IMR1 Cluster: CG31072-PB, isoform B; n=3; Sophophora|...    33   4.9  
UniRef50_UPI0000499464 Cluster: DNA repair protein Rad50; n=1; E...    33   8.5  
UniRef50_A0BYR3 Cluster: Chromosome undetermined scaffold_137, w...    33   8.5  

>UniRef50_Q6NS55 Cluster: Pitpnm2 protein; n=7; Eutheria|Rep:
           Pitpnm2 protein - Mus musculus (Mouse)
          Length = 1098

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 400 PSISSESAAEVNSLVAAVEEGAKEEFFDAHESYHVIPDNQIEN 528
           PS  S S   + S+    +EG++EEFFDAHE+ +   + Q ++
Sbjct: 317 PSRHSISEWRMQSIARDSDEGSEEEFFDAHENLYCTEEKQAKD 359


>UniRef50_Q486R3 Cluster: Sensor protein; n=1; Colwellia
           psychrerythraea 34H|Rep: Sensor protein - Colwellia
           psychrerythraea (strain 34H / ATCC BAA-681)
           (Vibriopsychroerythus)
          Length = 434

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 283 SQEVFGCRIPQ-YLKKTKTYLRYPLDREYLQHQNFDFPCYLL 161
           +Q + G R P  + ++    LR P   +YL H+NF++PC L+
Sbjct: 127 AQRLLGVRWPDDFGQRIDNLLRAPEFSDYLAHENFEYPCLLV 168


>UniRef50_Q8IMR1 Cluster: CG31072-PB, isoform B; n=3;
           Sophophora|Rep: CG31072-PB, isoform B - Drosophila
           melanogaster (Fruit fly)
          Length = 887

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 491 SCASKNSSLAPSSTAATRELTSAALSEEILGSILSVT-CLT 372
           S  S +SS + SST+ T   T+ A    ILG+ILSVT C+T
Sbjct: 791 SNGSTSSSTSSSSTSTTTSTTTQASPAAILGAILSVTFCVT 831


>UniRef50_UPI0000499464 Cluster: DNA repair protein Rad50; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: DNA repair protein
           Rad50 - Entamoeba histolytica HM-1:IMSS
          Length = 1241

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 12  NFEQTVNKACQENSMKQNLCH*RKNIKNVKIKTIQ 116
           N E+ VNK CQE   +Q   + R   +N +IKTIQ
Sbjct: 850 NKEKEVNKRCQEKESRQKNYNERNEKRNKEIKTIQ 884


>UniRef50_A0BYR3 Cluster: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 4112

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 24/73 (32%), Positives = 38/73 (52%)
 Frame = -1

Query: 337 QVNYFPQ*DRLS*LHEYPSQEVFGCRIPQYLKKTKTYLRYPLDREYLQHQNFDFPCYLLP 158
           Q+  F +    S ++ YP++   G ++ QYLK  KT  R  ++R   Q+QN +    L P
Sbjct: 706 QIKIFKREHENSVVNIYPAENSNG-QVSQYLKDLKT--RQTVNRVAQQNQNLEENQNLKP 762

Query: 157 VSTMKCCVKLLFV 119
           V     C++L FV
Sbjct: 763 VYFSVDCLRLAFV 775


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,298,355
Number of Sequences: 1657284
Number of extensions: 8005867
Number of successful extensions: 21911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21908
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)