Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29d04
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   3.3  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   5.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   5.8  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   5.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   7.7  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 479 KNSSLAPSSTAATRELTSAALSEEI 405
           KN+SL+PSS+ A  + T  +L E+I
Sbjct: 14  KNASLSPSSSPAKAQRTHLSLEEKI 38


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 410 LRRAQQKSILSLQQLRKALKRNSSMHTRAIMLFQTIKSKIQKLK 541
           L   ++  +L LQ+L+ + +R      RA+ L + I  K QKL+
Sbjct: 470 LSNQKRLRLLRLQKLKDSQERKKVSAIRAVKLMKEIVEKKQKLE 513


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 479 KNSSLAPSSTAATRELTSAALSEEI 405
           +N ++ PSST  TR  T+  L EE+
Sbjct: 559 QNPNILPSSTNPTRPFTTNTLDEEL 583


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 119 LLNGFDFHIFNIFSLMTQVLFH*IFLTSFIDS 24
           +L GFD  I +I S M ++  H + +T+FI+S
Sbjct: 109 ILPGFDLGIKDIASEMLEMGSHYLSITAFIES 140


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +2

Query: 572 NKDQKQL-HNR---PQVPNHLPQTLPNRIKSLRL 661
           NK +K + H++     V N LPQ +P+ ++SLRL
Sbjct: 576 NKTRKSISHSKNTDKHVGNELPQDIPSWLRSLRL 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,320
Number of Sequences: 5004
Number of extensions: 38594
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)