Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29d02
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 61 1e-09
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 42 4e-04
11_06_0281 + 21881382-21881538,21882162-21882394,21882783-218828... 38 0.006
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 31 0.89
12_01_0909 - 8828921-8829004,8829204-8829249,8829798-8829919,883... 31 1.2
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 30 2.0
10_08_0931 - 21647562-21649037 29 3.6
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 29 3.6
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 29 4.7
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 29 4.7
09_04_0268 - 16253312-16253358,16253618-16253789,16253881-162543... 28 6.2
11_05_0090 + 18979316-18981070 28 8.3
10_01_0336 + 3707065-3707174,3707183-3708185 28 8.3
01_06_0953 + 33311347-33312651 28 8.3
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 28 8.3
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 60.9 bits (141), Expect = 1e-09
Identities = 46/134 (34%), Positives = 68/134 (50%)
Frame = +2
Query: 299 LDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINF 478
+D + R+I D+ KK++ L+GAG+ST +GIPD+RSP G Y + K L + + I
Sbjct: 32 VDLLYRFI--DQSKKLMVLTGAGMSTESGIPDYRSP-NGAYSSGFK-PLTHQEFVRSIRA 87
Query: 479 FRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAGIPEEKL 658
R+ + + +P +HY + L G + TQN+D L AG K
Sbjct: 88 RRRYWARSYAGWRRF--RRAQPNSAHYALASLERIGRVHSMVTQNVDRLHHRAG---SKP 142
Query: 659 VEAHGTFYTSHCLD 700
VE HG+ Y CLD
Sbjct: 143 VELHGSVYEVACLD 156
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 542 PTISHYFIRLLHEKGLLLRHYTQNIDTLERGAGIPEEKLVEAHGTFYTSHC 694
PT++H + L + G L +QN+D+L +G+P EKL E HG + C
Sbjct: 61 PTLTHMALVELEKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEIC 111
>11_06_0281 +
21881382-21881538,21882162-21882394,21882783-21882869,
21882920-21883396
Length = 317
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = -2
Query: 293 PHPKLFLVVLPVQDPEG*RVRVLRPSTFERHPRRDRETYF*GFPS 159
P LFL+ LP+QDP+ R R RP + HPRR R GFP+
Sbjct: 162 PGQPLFLLRLPLQDPDRRRAR-RRPHPLDAHPRRRRGHRTAGFPA 205
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.1 bits (67), Expect = 0.89
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 322 QER*VQEDHNTFRSWYFYLC-WNSRLP*SRNRIIS*LTEVRTTSTTGDIRN 471
QE Q+D N F W FYLC W P S+ +II L ++T D N
Sbjct: 649 QEGGPQDDGNLFTRW-FYLCMWYKDDPHSQEKIIYYLARLKTKDILRDSGN 698
>12_01_0909 -
8828921-8829004,8829204-8829249,8829798-8829919,
8830013-8830078,8830520-8830771,8830859-8830939,
8831193-8831294,8831373-8831410,8831497-8831602,
8831694-8831816,8831918-8831994,8833095-8833240,
8833355-8833533
Length = 473
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +2
Query: 317 WIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPK 496
W K + + +G G+S S D+ + + + + L Q ++ F NP
Sbjct: 132 WSKVSSVIYLDSPAGVGLSYSKNTSDYNTGDLKTAADSHTFLLKQWFQLYPE--FLSNP- 188
Query: 497 PFFTLAKELFPGSFKPTISHYFIRLLHE 580
F +A E + G + PT+SH ++ LH+
Sbjct: 189 --FYIAGESYAGVYVPTLSHEVVKGLHD 214
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 347 ITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTLAKELF 526
+ GA I + D R P+ ++ N ++Y+LP+P I + N P+ KE+F
Sbjct: 265 MAFQGADIDIRV-VRDGRGPDCNIWSNFEQYKLPEPLCILRAD---NNVPPWRPGLKEVF 320
>10_08_0931 - 21647562-21649037
Length = 491
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 71 RKMSANSPPGKSGGHETVDESP 136
R++S ++P G GGHETV SP
Sbjct: 196 RRISQDTPGGGGGGHETVLPSP 217
>08_02_1426 +
27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 KVSNRFSNCQYWTKVSRRNFVFLRKMSANSPPGKSGGHETVDESPQNVPPTTSMESLRNM 181
KV +RF C W KV F + + K+ HE +PQ P + + +L M
Sbjct: 209 KVKDRFPECHAWVKV-MHPFDAKEFIGSLVRQFKANSHEGTSNTPQGTP--SGVSALNEM 265
Query: 182 -FRDLD-VDDVRMYLALK 229
+D + +DD Y+A K
Sbjct: 266 EAKDYNLLDDFCKYVANK 283
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 28.7 bits (61), Expect = 4.7
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +2
Query: 230 LGLFSPQDLEPAE-PPEKVLDEVSLDGIVRWIKS-DRCKKIITLSGAGISTSAGIPDFRS 403
+G+ + +++ E P + V+ DG+ ++ S D + LS G+ ++ +P
Sbjct: 265 VGVIAEPEVKSVEITPAHLFFVVASDGVFEFLSSQDVVDMCVNLSAFGLYEASDVP---- 320
Query: 404 PETGLYHNLQKYELPQ---PQAIFEINFFRQNPKPFFTLAKELFPGSFK 541
TG+ L K P + +++ Q P TLA LF GS K
Sbjct: 321 -RTGVAAKLMKCLNENGISPASTSKLDVHSQKPNQSMTLAYVLFRGSMK 368
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 107 GGHETVDESPQNVPPTTSMESLRNMFRDLDVDDVRMYLALKLGLFSPQDLEPAEPPEKV 283
GGHET +++ +++ T + ++ + + L + V L +G+ SP + + EKV
Sbjct: 747 GGHETAEKNGRSLKNTIEVATVLRIVQRLFKEAVSTQSKLSVGVVSPYNAQVRAIQEKV 805
>09_04_0268 -
16253312-16253358,16253618-16253789,16253881-16254359,
16255723-16255801,16255918-16255923
Length = 260
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 107 GGHETVDESPQNVPPTTSMESLRN--MFRDLDVDDVRMYLALKLGLFSPQDLEPAEPPEK 280
GG +V P+N P + ME L + + + + +A + + P + E E E
Sbjct: 168 GGFTSVVPEPRNTFPQSRMEKLLKAILQKKIHPQNSSTLVAKRHLDWKPDETEINECLED 227
Query: 281 VLDEVSLDGIVRWIKSD-RCKK 343
L ++ DG +W+K+D C K
Sbjct: 228 ALRDLDDDG-AKWVKTDSECSK 248
>11_05_0090 + 18979316-18981070
Length = 584
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -3
Query: 412 CFGTTEVWNSSRGRN---TSS*KCYDLLAPIALDPPDNTIKA 296
C+G TE+ ++ R R+ T + + L++P A PPD+T+ A
Sbjct: 269 CYGATEI-DAPRLRSFKYTGFARRFSLVSPAAAPPPDDTVVA 309
>10_01_0336 + 3707065-3707174,3707183-3708185
Length = 370
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 290 EVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYH----NLQKYELPQP 454
EVS DG V W+ + I L G I +A + R+ + G+ N + LPQP
Sbjct: 293 EVSADGAVDWVHTQNALVSIPLPGVLIGAAASLLFVRTEDGGIVSVQVGNGRFQMLPQP 351
>01_06_0953 + 33311347-33312651
Length = 434
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 164 PSKLLAGHSAV--THPRFRDRH 105
P KL++G A THPRFR RH
Sbjct: 73 PDKLVSGFIAASSTHPRFRARH 94
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 407 ETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTL----AKELFPGSFKPTI 550
E + HN+++Y+LP + + ++ N + F+ L +EL P + PT+
Sbjct: 94 ERKIMHNIRQYQLPLQKYMAMMDLQEGNERLFYKLLIDNVEELLPVVYTPTV 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,701,902
Number of Sequences: 37544
Number of extensions: 433383
Number of successful extensions: 1080
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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