Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c24
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    27   2.0  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    27   2.0  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    27   2.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.6  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    26   6.1  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   8.0  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   8.0  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 290 RHNEDLNIVSKVL-SLNHGIPLNNVSNRLPFDSRRQVNTFI*TK 418
           RH     +V K++     G PL  V+ R P+  R  V TF+ T+
Sbjct: 36  RHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 290 RHNEDLNIVSKVL-SLNHGIPLNNVSNRLPFDSRRQVNTFI*TK 418
           RH     +V K++     G PL  V+ R P+  R  V TF+ T+
Sbjct: 36  RHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 290 RHNEDLNIVSKVL-SLNHGIPLNNVSNRLPFDSRRQVNTFI*TK 418
           RH     +V K++     G PL  V+ R P+  R  V TF+ T+
Sbjct: 36  RHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATE 79


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 204 DFSRSNREPINLHQILSSSNYYSKLD*MDDITKI 305
           DF + + +    HQI S  NY    D MDD T +
Sbjct: 643 DFVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDV 676


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 247 IWCKLIGSRLLREKSVRVNRIKSVEAIVVLIVDS*VANTYLL--AENTSVLFRNLLICG 77
           IW +LI SR   EKSV  +   S+E +  +++     + Y      N  + F  L++CG
Sbjct: 429 IWFQLILSREFTEKSVSAHEFFSLEDVQHILLS--YGSDYFTNNGSNPVMYFFLLMLCG 485


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 522 LFINCGLK--HILQDIGNGIFQEDYKISNFLSKAINLLV*INVFTCLLLSK 376
           LF   GL    IL   G+ I + D+K S F++    LL+ + +FT    SK
Sbjct: 151 LFFLYGLSGTSILYTAGDHIRKLDFKDSGFITPFFQLLLLVLLFTLTFKSK 201


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 526 NQRKAEIRLHNYKNIKT*RKNNKFDRIYRSDSLLF 630
           N  K+ ++  N+ NI    K N F ++ +SD LLF
Sbjct: 128 NSIKSILQFQNFSNIFA--KKNLFPKVSKSDVLLF 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,317
Number of Sequences: 5004
Number of extensions: 59331
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)