Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c24
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700...    30   1.6  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    28   6.3  

>02_02_0121 +
           7005356-7005418,7007533-7007632,7007713-7007810,
           7007933-7008021,7008111-7008171,7008253-7008339,
           7008409-7008486,7008583-7008639,7008731-7008786,
           7008877-7009012,7009103-7009324
          Length = 348

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -3

Query: 393 CLLLSKGKRFETLFNGMPWFRDRTLDTIFKSSLCRPFSPVW 271
           CL +S G    TLF     +RDR L  I  S LC+P  P W
Sbjct: 123 CLGVSAGAYILTLFAAK--YRDRVLGLILVSPLCKP--PTW 159


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   PQGIGTFLQPSPTQSFHQGLNLNQISTNQQVPKQNTRVFRQEVGV 136
           PQGI +F+ PS   +         +  +  +P+Q  ++FRQ +GV
Sbjct: 602 PQGINSFVLPSVGSTPLATPTPGAVPNSVGIPQQPLQLFRQHLGV 646


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,387,003
Number of Sequences: 37544
Number of extensions: 310642
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)