Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c19
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14461| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_10653| Best HMM Match : Response_reg (HMM E-Value=7.79963e-42) 30 1.4
SB_18373| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_35435| Best HMM Match : ABC_tran (HMM E-Value=6.2) 28 5.7
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4) 28 5.7
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23) 28 7.6
>SB_14461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 56.0 bits (129), Expect = 2e-08
Identities = 42/138 (30%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Frame = +3
Query: 222 DTLEKKAVHLRLV--LEKDFKAADLKWSLFVAAAFSFRYESCLRPFPPAFMK-SGIKDMD 392
D++EK+ R++ L D A DL+ LFVAA S+R++S LRP+PP ++ G K++
Sbjct: 3 DSVEKETQLERVIGKLRSDGFACDLRMCLFVAALESYRHDSILRPYPPVGLREDGSKNIQ 62
Query: 393 ELLSVITDVPALDLVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTDVHEQI-L 569
+L ++ + +P+L L LE P + ++D +VL LK+ +KT+ + ++I
Sbjct: 63 KLTNLSSSIPSLS-ALNNDSCLE--PGVWSLLD---WVL--LKKFDVKTLDKSMFQEIEK 114
Query: 570 AMANTMTTPSKPQHIFQV 623
++ ++P +IF++
Sbjct: 115 KTGHSSYNSTEPDYIFEI 132
>SB_10653| Best HMM Match : Response_reg (HMM E-Value=7.79963e-42)
Length = 399
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +3
Query: 372 SGIKDMDELLSVITDVPALDLVLQQLDNLEALPNISDIIDLLFYVLVRLKEPTLKTVPTD 551
SG +D+L D LD+++ +D + L I+ +ID+ +V + T K P +
Sbjct: 45 SGQDALDQLQGFAPDFILLDVMMPNMDGPQTLAQIARLIDINLVPVVFM---TAKVQPAE 101
Query: 552 V-HEQILAMANTMTTPSKPQHI 614
+ H + L + + P P +
Sbjct: 102 IAHYRSLGARDVIIKPFDPMQL 123
>SB_18373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 171 NIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLK 293
+ A ++ + D+N TL+K+ +HL+ V E + + D K
Sbjct: 76 SFAGIASKIMDVNSMNSRTLDKEIMHLKRVQEAEDRKEDRK 116
>SB_14090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 171 NIASVSETMSDINQTKLDTLEKKAVHLRLVLEKDFKAADLK 293
+ A ++ + D+N TL+K+ +HL+ V E + + D K
Sbjct: 262 SFAGIASKIMDVNSMNSRTLDKEIMHLKRVQEAEDRKEDRK 302
>SB_35435| Best HMM Match : ABC_tran (HMM E-Value=6.2)
Length = 181
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +3
Query: 276 KAADLKWSLFVAAAFSFRYESCL----RPFPPAFMKSGIKDMDELLSVITDVPALDLVLQ 443
K AD SL RY++ L +PFP FM+ ++ + + A++ +L
Sbjct: 91 KEADYLLSLAETQESIARYQTSLVFVIKPFPECFMEDNVRLSPRIDEAVAFTAAMEALLH 150
Query: 444 QLDNLEALPNISDIIDLLFYVLVRLKE 524
+L L ++ D+ + + V ++ E
Sbjct: 151 RLQITYTLIDVLDVQERVNIVKEKIAE 177
>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
Length = 327
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 382 KTWTNCLV*SLTCQLWIWCYNNWIIWKRCQISVISSTYCFTS 507
K++ NC V S TC + Y N + +K C VIS C S
Sbjct: 3 KSYLNC-VPSKTCTAMVKSYLNCVPFKTCTAMVISYLNCVPS 43
>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 565 ICSCTSVGTVFNVGSLSRTRT*NNK-SMISLIFGNA-SKLSNCCSTKSKAGTSVITL 401
+CSCT G +F V +TR NK +M S+ G + +L+N T + T V TL
Sbjct: 1189 LCSCTVTGLLFAVYYSCKTRVLKNKENMSSMEEGESLMELANTEPTGNAEDTLVNTL 1245
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 425 SWHVSDYTKQFVHVFDATFHKSRRKR 348
+W + ++ ++F H+F F K R KR
Sbjct: 577 AWRMEEFRREFKHIFIGCFRKLRCKR 602
>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
Length = 417
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 425 SWHVSDYTKQFVHVFDATFHKSRRKR 348
+W + ++ ++F H+F F K R KR
Sbjct: 390 AWRMEEFRREFKHIFIGCFRKLRCKR 415
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,082
Number of Sequences: 59808
Number of extensions: 367437
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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