Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c19
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR...    33   0.16 
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    32   0.29 
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    32   0.29 
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont...    29   3.5  
At5g01570.1 68418.m00072 hypothetical protein hypothetical prote...    28   6.2  

>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1194

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
 Frame = +3

Query: 165  NCNIASVSE-TMSDINQTK-LDTLEKKAVHLRL--VLEKDFKAADLKWSLFVAAAFSFRY 332
            N N+ S+    ++D +Q K    +      LRL     K+   + + WS    A F   Y
Sbjct: 875  NINLKSLDTLNLTDCSQLKSFPEISTHISELRLKGTAIKEVPLSIMSWSPL--ADFQISY 932

Query: 333  ESCLRPFPPAF---MKSGI-KDMDELLSVITDVPAL-DLVLQQLDNLEALPNISDIIDLL 497
               L  FP AF    K  + KD+ E+   +  +  L DL L   +NL +LP +SD +D +
Sbjct: 933  FESLMEFPHAFDIITKLHLSKDIQEVPPWVKRMSRLRDLSLNNCNNLVSLPQLSDSLDYI 992

Query: 498  F 500
            +
Sbjct: 993  Y 993


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 534 KTVPTDVHEQILAMANTMTTPSKPQ 608
           KTVPTD+H++ LAM   +   SKP+
Sbjct: 610 KTVPTDLHKKRLAMVRALLESSKPE 634


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 534 KTVPTDVHEQILAMANTMTTPSKPQ 608
           KTVPTD+H++ LAM   +   SKP+
Sbjct: 610 KTVPTDLHKKRLAMVRALLESSKPE 634


>At5g45510.1 68418.m05590 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 1222

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 384 DMDELLSVITDVPAL-DLVLQQLDNLEALPNISDIIDL 494
           ++ EL + I D+ +L +L+L+   NL+A+PNI  + +L
Sbjct: 871 NLSELATTIEDLSSLNELLLRDCINLDAIPNIEKLENL 908


>At5g01570.1 68418.m00072 hypothetical protein hypothetical protein
           T16O11.19 - Arabidopsis thaliana, EMBL:AC010871
          Length = 157

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 390 DELLSVITDVPALDLVLQQLDNLEALP 470
           DEL+ V+ D    D+++Q L+ L A+P
Sbjct: 16  DELIHVLDDRKGFDVLVQTLEQLRAIP 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,142,399
Number of Sequences: 28952
Number of extensions: 265946
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)