Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c17
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    28   1.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.9  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   6.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   8.5  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 527 KDICIHNQEAVICILFLHH--HQLRFAFLPSFSYMES 423
           KD+  + QE ++C  FLHH       + L S S MES
Sbjct: 273 KDLTSYTQEVIVCRKFLHHSLSPSIHSTLSSISKMES 309


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/80 (25%), Positives = 28/80 (35%)
 Frame = +1

Query: 127  FNVFFGDSFQFCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGPTTQ 306
            F+ F      F  M       G      S   L      + A+ E+    RP S+GP+ Q
Sbjct: 1559 FSKFVAGDPNFDVMRPATVGPGPFGKVASQKNLTVQTNTNNAAMESFYSDRPTSSGPSYQ 1618

Query: 307  NDFQLLDEEYIRKNFKLPQR 366
            N   L  +E +      P R
Sbjct: 1619 NRTPLTGQESMNMGVYSPYR 1638


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 335  YSSSSNWKSF*VVGPADAGRGFVLASEDAPSRGTRQTSGRLD 210
            + S SN+KS    G +  G G +  S     RG+R+  G  D
Sbjct: 917  FGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQRGSRRGGGERD 958


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 391 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 299
           V  GP++TP+++  S S   P+   G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRDGASSEARTKPRPASAGP-TTQNDFQLLDEE 333
           F   T+  T EG+ S  K ++P+V  VP      +A   P+     P T QN ++ L+  
Sbjct: 9   FSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKA---PKHIQEQPWTMQNWWRHLNWL 65

Query: 334 YIRKNFKLPQRALY 375
           +    F LP  A+Y
Sbjct: 66  HCMLIFGLPMIAIY 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,573
Number of Sequences: 5004
Number of extensions: 58745
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)