Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c17
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447           30   2.2  
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981...    29   2.9  
08_01_0764 - 7332969-7333870,7334044-7334369,7334712-7335384,733...    29   3.9  
11_01_0177 + 1406725-1406920,1407444-1408267                           29   5.1  
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481...    28   6.7  
05_01_0545 - 4756266-4757510                                           28   8.9  

>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
          Length = 607

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +1

Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVCLVPRD 246
           FCK  SCC C         SL LVC    D
Sbjct: 68  FCKRCSCCICHQFDDNKDPSLWLVCASEND 97


>01_01_1215 +
           9815918-9816218,9816772-9816912,9816988-9817106,
           9817922-9818191,9818330-9818369,9818519-9818616,
           9818745-9818825
          Length = 349

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 244 DGASSEARTKPRPASAGPTTQND 312
           +GASSE  T+PRP  A P T  +
Sbjct: 43  EGASSEPETRPRPPPATPATAEE 65


>08_01_0764 -
           7332969-7333870,7334044-7334369,7334712-7335384,
           7336195-7336219
          Length = 641

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVC 231
           +CK  SCC C  +      SL LVC
Sbjct: 155 YCKRCSCCICHKYDENKDPSLWLVC 179


>11_01_0177 + 1406725-1406920,1407444-1408267
          Length = 339

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 190 GHHSGAKSSLPLVCLV-PRDGASSEARTK---PRPASAGPTTQNDFQLLDEEYIRKNFKL 357
           G  +G  S   L+ +  P+ G  ++AR           G T  +DFQL+D   I   F L
Sbjct: 144 GQDNGVDSDNSLIPMPGPKRGIGNQARVLIEFDMKIKNGETRDDDFQLIDGAIICSEFVL 203

Query: 358 PQR 366
           P R
Sbjct: 204 PNR 206


>12_02_0616 -
           21246374-21246462,21246605-21247702,21247800-21248110,
           21248550-21249251,21252802-21252912,21253396-21253481,
           21253753-21253862,21254085-21254236,21254656-21254765
          Length = 922

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 157 FCKMTSCCTCEGHHSGAKSSLPLVC 231
           FCK  SCC C         SL LVC
Sbjct: 347 FCKRCSCCICHLFDDNKDPSLWLVC 371


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 485 LFLHHHQLRFAFLPSFSYMESSCVIGKVIRGRLYGSKYNALCGNL 351
           +FL+H++LRFA   +F    +S +   V+ G  +G    A  GN+
Sbjct: 198 IFLNHNRLRFALPDNFGNSPASVI---VLAGNHFGGCLPASLGNM 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,840
Number of Sequences: 37544
Number of extensions: 378203
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)