Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c17
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U80839-12|AAB37918.1|  252|Caenorhabditis elegans Hypothetical
           protein ZC204.12 protein.
          Length = 252

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 151 FQFCKMTSCCTCEGH-HSGAKSSLPLVCLVPRDGASSEARTKPRP-ASAGPTTQND 312
           ++ C M + C  E H   G+     +   +  + +S ++  KP+P A   PT +ND
Sbjct: 98  YEVCAMFTECETENHFEKGSDLRFEVELTIVMENSSKKSSVKPKPEAKQEPTKEND 153


>Z68336-3|CAA92735.1|  710|Caenorhabditis elegans Hypothetical
           protein F22B3.4 protein.
          Length = 710

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 230 AWFLAMEHLRKPGQSPGLHQLGPQLKMISSCSTRSTSGKTLSCHRGRC 373
           A+ LA +  R PGQ     +  P L  I S ST  TS   +S  +GRC
Sbjct: 181 AFALAFKSSRFPGQLVASRRGSPLLVGIKSNSTLHTSHFPVSYSKGRC 228


>Z22177-8|CAB76721.1|  136|Caenorhabditis elegans Hypothetical
           protein ZK512.9 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 551 AF*WFDYAKDICIHNQEAVICILF 480
           AF +  +A+D CIH++  + C+L+
Sbjct: 110 AFSYLAHAQDYCIHSRHGITCLLY 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,989
Number of Sequences: 27780
Number of extensions: 339080
Number of successful extensions: 1156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)