Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c14
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical pr...   106   1e-23
AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical ...    99   2e-21
AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical ...    99   2e-21
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    55   5e-08
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical
           protein F37A8.5 protein.
          Length = 137

 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
 Frame = +1

Query: 82  KMGKIFLDHI-GGTRLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQD 258
           K  K F  ++  G R +SC  C  NL   +ELIS  F G+ G+A+LF+ VVN+     ++
Sbjct: 18  KKQKTFQHYLPAGDRCYSCIHCRANLAAHAELISKSFQGSQGKAYLFNAVVNVGCGPAEE 77

Query: 259 RVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEE 426
           RV+LTG H V D+ C+ C T LGW YE A E +Q+YKEG+ I+E A + + +G +E
Sbjct: 78  RVLLTGLHAVADIYCEICKTTLGWKYEHAFESSQKYKEGKFIIELAHMVKDNGWDE 133


>AF038604-4|AAO38680.1|  134|Caenorhabditis elegans Hypothetical
           protein B0546.4b protein.
          Length = 134

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = +1

Query: 85  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDR 261
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG A LF +  N++Y   + R
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCEHR 60

Query: 262 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 396
            M TG H VRDV C  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 61  KMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105


>AF038604-3|AAB92012.1|  161|Caenorhabditis elegans Hypothetical
           protein B0546.4a protein.
          Length = 161

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 49/105 (46%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
 Frame = +1

Query: 85  MGKIFLDHIGGT-RLFSCASCDVNLTNRSELISTRFTGATGRAFLFHKVVNLIYSEVQDR 261
           MG+ F    G    L+ C  C+  LT   EL S  FTG+TG A LF +  N++Y   + R
Sbjct: 1   MGRQFAGICGARGSLYGCVVCNTYLTCSKELTSKAFTGSTGPATLFKRAWNVVYGRCEHR 60

Query: 262 VMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 396
            M TG H VRDV C  C  KLGW+YE A  E+Q YKE +VI+E A
Sbjct: 61  KMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENA 105


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = +1

Query: 298 SCKNCGTKLGWVYEFATEENQRYKEGRVILERALVTESDGIEEI-QVN 438
           S K+C  +LGW+YE A  +N++YKEG VILER  +TE +   +I Q+N
Sbjct: 3   SVKSCRAQLGWMYELAPNDNEKYKEGSVILERMNITEREAFSKISQMN 50


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 394 LVPILLSLPCIFDSLQLQIHIPNPASYRSSY 302
           ++P+++SLP +  S +    IP P+S+ S++
Sbjct: 248 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTW 278


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 394 LVPILLSLPCIFDSLQLQIHIPNPASYRSSY 302
           ++P+++SLP +  S +    IP P+S+ S++
Sbjct: 244 VIPVIVSLPLLLLSFEFYFGIPMPSSFGSTW 274


>Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical
           protein C44C10.9a protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 320 FVPQFLQETSRTM*RPVSITRS*TSE*IRFTTLWNKNARPVAP 192
           F+P  +QET+  M +PV IT+    E  R +   +    P++P
Sbjct: 101 FIPSPMQETTLMMPKPVQITQRNEDEISRASVAQHVEPAPLSP 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,044
Number of Sequences: 27780
Number of extensions: 221995
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)