Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c12
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.006
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 31 0.16
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 31 0.16
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 30 0.28
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 29 0.64
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 29 0.64
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.85
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.1
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 1.5
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 28 1.5
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 28 1.5
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 2.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.0
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.6
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 27 2.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 3.4
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 4.5
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 26 4.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.5
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 26 4.5
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 26 6.0
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 6.0
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 6.0
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 6.0
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 6.0
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 26 6.0
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 6.0
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.006
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Frame = +2
Query: 197 SPTQDFERTPIIISSKINDLTNDT-ENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPD 373
S +++ E + I K ++ + E+ S+S +S S++++ E E KE S +
Sbjct: 144 SESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSE 203
Query: 374 LISP-KNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNENKPTKLLETNFDCNE 550
S ++ + +S +D+ D+E SS+ ++ +A ++E +P K+ + + D NE
Sbjct: 204 SSSDSESSSDSSSESGDSDSSSDSESE--SSSEDEKKRKAEPASEERPAKITKPSQDSNE 261
Query: 551 VCDI 562
C +
Sbjct: 262 TCTV 265
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +2
Query: 113 TNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLISD 292
T+ +++L +L + HL S DP R +++ S ++ L+ +E+++L
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDP--------RLAVVMDSLLSVLSTPSESVQLAVA 1344
Query: 293 SCTSPITSKDKDNSCETY 346
C P+ K S E Y
Sbjct: 1345 VCLPPLVKKSLGKSKEYY 1362
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 266 TENLRLISDSCTSPITSKDKDNSCETYMEAKEFSP-DLISPKNLCN----GFLDSTFNDT 430
TE + + D+ T + K ++ + AK+ + + +N+ + FLD T +
Sbjct: 307 TETVNEVQDTKTDITSEKSALDAYYATLRAKQKEESEFMDSENVDDEEDDDFLDVTTATS 366
Query: 431 LQDNEEPLGSSTASKETLEANKSNENKPTKLLETN 535
LQ+ GS E L ++ +NK TK +E N
Sbjct: 367 LQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEEN 401
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 455 GSSTASKETLEANKSNENKPTKLLETNFDCNEVCDIEFNSKRNSMSNPDSTEVNDSREQC 634
G++ SKE L N N+N P + + D NE SK+ ++S+P + ++ Q
Sbjct: 74 GNAVNSKE-LSPNTDNQNTPAGPTKHSLDENEKDKENKKSKKETVSSPAEQLLALTQNQE 132
Query: 635 MPVFKILE 658
+ ++K+L+
Sbjct: 133 ISLYKLLK 140
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.1 bits (62), Expect = 0.64
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 374 LISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNE-NKPTKLLETNFDCNE 550
L PK N +ST D L EEP + KE+ + SN +P +N +
Sbjct: 49 LEEPKYHDNSNKESTNLDDLNMLEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSNKESTN 108
Query: 551 VCDIEFNS--KRNSMSNPDSTEVNDS 622
+ D+ + K + SN +ST +++S
Sbjct: 109 LDDLNMSEEPKHHDSSNKESTNLDNS 134
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 374 LISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNENKPTKLLETNFDCNE 550
L PK+ N +ST D L +EEP +++KE+ + SN ++ + NF E
Sbjct: 93 LEEPKHHDNSNKESTNLDDLNMSEEPKHHDSSNKESTNLDNSNMDESEN--QKNFKIEE 149
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 410 DSTFNDTLQDNEEPLGSSTASKETLEANKSNE 505
+ TF + + NE GS+ A ETLE SNE
Sbjct: 15 EPTFENVSEHNEHDSGSAEAQVETLEVPLSNE 46
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 0.85
Identities = 24/124 (19%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +2
Query: 260 NDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCNGFLDSTFNDTLQD 439
++ E+L+ + ++ I S D+D S +PD ++ N+ D + LQD
Sbjct: 4318 DEEEDLQALGNAEKDQIKSIDRDESANQ-------NPDSMNSTNIAEDEADEVGDKQLQD 4370
Query: 440 NEEPLGSSTASKETLEANKSNENKPTKLLETNFDCNEVCDI-EFNSKRNSMSNPDSTEVN 616
++ ++TL + N+ K+ E + D + ++ ++N K ++ P + ++
Sbjct: 4371 GQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVKITNL--PAAMPID 4428
Query: 617 DSRE 628
++R+
Sbjct: 4429 EARD 4432
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 233 ISSKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCN--GF 406
+ +INDLT D E L+ +D T K + +EF L+ +N N
Sbjct: 170 LKERINDLTYDYETLKANADDSEGKQTLVSKREAA-----LEEFQSKLLIRENEINKREL 224
Query: 407 LDSTFNDTLQDNEEPLGSSTASKETLEANKSNENKPTKLLETNFDCN 547
+ D L+ E+ L + E E KS + TKL E N + N
Sbjct: 225 KMNGKEDDLKKREKDLENRLLKVE--EHEKSLNERATKLSEANENFN 269
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 386 KNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNENK 511
K++C L++ + LQ+ ST + +T +A+ +NEN+
Sbjct: 421 KSICGDILENRWKSLLQEISSQKQLSTDASQTQDASIANENE 462
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 398 NGFLDSTFNDTLQDNEEPLGSSTASKETLE-ANKSNENKPTKLLETNFDCNEVCDIEFNS 574
+GF N+ Q+ P+ K E +N E K K TN D +C E
Sbjct: 265 SGFSMKGLNEPSQERL-PVEKEQNDKSDEEGSNNEQEEKQDKKQSTNRD---LCRKESCK 320
Query: 575 KRNSMSNPDSTEVNDSREQCMP---VFKILEYDP 667
K S+S+ D + ++C+P F+++E +P
Sbjct: 321 KEPSLSSSDQVTKFLALDKCLPRRSYFEVVEIEP 354
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 116 NGDEKLIHNNPILSAVIKNHLQSYD 190
N +K IH NP+LS V + +S+D
Sbjct: 808 NNSQKDIHRNPLLSHVFDTNTKSFD 832
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.5 bits (58), Expect = 2.0
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Frame = +2
Query: 461 STASKETLEANKSNENKPTKL---------LETNFDCNEVCDI-EFNSKRNSMSNPDSTE 610
S S+++L SNEN +L LE D + +C I + + N +S
Sbjct: 191 SIQSRDSLVRYVSNENYIDRLIELFPLCEDLENTDDLHRLCSIIKSFVQLNDAPLLESLF 250
Query: 611 VNDSREQCMPVFKILEYDPRSPSI 682
ND + C V ILEYDP P+I
Sbjct: 251 SNDEKLMC--VAGILEYDPEFPNI 272
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/148 (19%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Frame = +2
Query: 230 IISSKINDLTNDTENLRLISDSCTSPITS--KDKDNSCETYMEAKEFSPDLISPKNLCNG 403
+ S++N+L + + S+ +S +++ +K+ + T E E L + LCN
Sbjct: 529 VYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVATNNELSESKNSL---QTLCNA 585
Query: 404 FLDSTFNDTLQ--DNEEPLGS-STASKETLEANKSNENKPTKLLETNFDCNEVCDIEFNS 574
F + +Q +NE+ S T+ K+ E+++ EN + + D + +
Sbjct: 586 FQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQ-QLQL 644
Query: 575 KRNSMSNPDSTEVNDSREQCMPVFKILE 658
+R + +ST +++ + + K+ E
Sbjct: 645 ERANFEQKESTLSDENNDLRTKLLKLEE 672
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.6
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Frame = +2
Query: 107 ESTNGDEKLIHNNPILS----AVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTEN 274
+S +EKL+H+NP V++ L + + SP D + K DL D EN
Sbjct: 76 DSVKQNEKLLHSNPTFKISKPTVLEQPLNAIEHLSPETDLSSSAEQQFMKELDLFFD-EN 134
Query: 275 LRL-----ISD-SCTSPITSKDKDNSCETYMEAK 358
+ L +SD SP T K + + E+ ++ K
Sbjct: 135 IPLSQLSAVSDGKADSPATKKSRRSYRESSLKRK 168
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.6
Identities = 29/149 (19%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Frame = +2
Query: 128 KLIHNNPILS-AVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLIS---DS 295
+ + NP+ S A ++ + + P++ +Q ++TP + S+K L ND + S D+
Sbjct: 80 RALAKNPVPSPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAKQRNSQSPGTDT 139
Query: 296 CTSPITSKDKDNSCETYMEAKE-FSPDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTAS 472
+ +T + + + F+PD N+ + + + D + STAS
Sbjct: 140 SDANLTIQSIEAPRRAPQRLSDFFTPDGRRVSNIRDSLISEKRLENNIDQVQESALSTAS 199
Query: 473 KETLEANKSNENKPTKLLETNFDCNEVCD 559
L K++E ++ ++++ +++ D
Sbjct: 200 SNRLIDLKNDEVPIFRIPLSDYETDDMDD 228
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Frame = +2
Query: 53 KNGAKHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPII 232
KN + DL++ TN + I+ + + ++ L+ D S ++
Sbjct: 676 KNTKNNTFILKSDLKEEERLTNFTIEEINKHKAIGVALRKLLEEADTSSNFSS-SNNHVL 734
Query: 233 ISSKINDLTNDTENLRLISD--SCTS-PITSKDKDNSCETYMEAKEFSPDLISPKNL 394
SSK + T + + I + S S +TS KDN + E ++ + + PKNL
Sbjct: 735 DSSKHTVSSASTSSRKFIENYKSLESIGLTSFVKDNKLKASKELQKLIEENVFPKNL 791
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 99 FLRSIFFVMLCLAPFFPIFTWYVHSL 22
F+ S+FF LC+ FFP FT Y +L
Sbjct: 359 FIFSLFF-FLCMRNFFPGFTIYFPAL 383
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 92 LRKTFESTNGDE---KLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSKINDLTN 262
L+K + T D + I +V+KNH S R P+++ +P + +ND
Sbjct: 13 LKKLWNDTKNDYLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRKNILNDQKK 72
Query: 263 DTENL 277
D E++
Sbjct: 73 DEESI 77
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 612 TSVESGFDMLFLLLLNSISQTSLQSKLVSNSLVGLFSLD 496
T +E D+ F++LLN + L + LVS V ++ +D
Sbjct: 71 TLLEQNEDIKFIILLNCGTMVDLNNYLVSMEDVSIYVID 109
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = -1
Query: 667 RIIFQNFKYWHTLFSTIIDFGGIWI*HAVSLTIKFYITNFIT 542
R+ F+ F+Y L ++II+FGG++ + + + +++IT
Sbjct: 160 RLFFRTFRYVF-LITSIIEFGGLFASNGKRGVLSHFRSSYIT 200
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 65 KHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIIISSK 244
KH + DL + + + L N +L + + SY +S T+D T IISS+
Sbjct: 497 KHYEQETKDLARQVQVLLHELDLCENGIVLGVDSRKKINSYVEKSLTEDETDTDQIISSR 556
Query: 245 I 247
+
Sbjct: 557 L 557
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 23 NECTYHVNIGKNGAKHNITKNIDLRKTFESTNGDEKLIHNN 145
N T+ + +GKN K+ + ++ RKT+E + ++ I NN
Sbjct: 349 NPPTWMLEMGKNSKKYYNSGFVNGRKTYELKSIEQFSIENN 389
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 407 LDSTFNDTLQDNEEPLGSSTASKETLEANKSNENKPTKLLETNFDCNEV 553
L+ T N+TL+ EEP+ A E ++ T L T+ N +
Sbjct: 289 LEETINNTLKPFEEPIAEGNADIEDWTFETVKKSDSTVLGNTSIPKNSI 337
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 601 IWI*HAVSLTIKFYITNFITIK 536
IW+ H ++L +K+ +NF+++K
Sbjct: 710 IWVSHWLNLMLKYVESNFLSVK 731
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 320 DKDNSCETYMEAKEFSPDLISPKNLCNGF 406
+ DN C + SP LI P N N F
Sbjct: 112 NNDNCCREIARRRSLSPLLILPLNFINAF 140
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Frame = +2
Query: 200 PTQDFERTPIIIS--SKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPD 373
PT D TP S + +L ENL ++ + ++S DNS ++ ++
Sbjct: 439 PTNDHSSTPAQSERDSDVEELREQLENLTALTKKLSERLSSSTFDNS--KFIRTEDKDTV 496
Query: 374 LISPKNLCN---GFLDSTFNDTLQD 439
+ +C F D T + TL+D
Sbjct: 497 RSAKLEICEKFFSFADVTDDPTLKD 521
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 573 LLNSISQTSLQSKLVSNSLVGLFSLDLLASRVSLEAVD 460
++NS+ S Q LV + +G LD+LA SLEA D
Sbjct: 454 VVNSVEFQSTQRYLVLSE-IGETDLDILAEPKSLEACD 490
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 98 KTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPII 232
K + D LI+ ++ AV+KN L +Y +PT + + I+
Sbjct: 546 KLWGMVRNDTVLINRANLMLAVLKNSLNTYIYMTPTTSVQPSQIL 590
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 266 TENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNL 394
T L +S + + I+ +D DNS + E+ SP + PK L
Sbjct: 634 TRRLSDLSVNSSGQISKQDFDNSNSIFSESSLSSPIIEEPKTL 676
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 88 YIFCYVMFSAIFSYIYMVCTFVACS 14
+ F Y +F YMVCT++ C+
Sbjct: 559 FSFVYDNEIVLFDTCYMVCTYIVCN 583
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 180 CKWFFITADRMGLLCINFSSPFVDSNVFLRSIFFVML 70
CK +F+ DR+ +L + FS ++ ++F+V+L
Sbjct: 717 CKHYFL--DRLAILFLTFSPTMCMLSISFEALFYVVL 751
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +2
Query: 446 EPLGSSTASKETLEANKSNE--NKPTKLLETNFDCNEVCDIEFNSKRNSMSNPDSTEVND 619
+PL SK L ++ N+ + TN ++ N + S N T ND
Sbjct: 53 KPLAGQVLSKSPLPPFSPSKIMNRSISVPPTNISVPQISSNPLNLMKKSSDNDIFTTFND 112
Query: 620 SREQCM 637
+ CM
Sbjct: 113 TTNDCM 118
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 56 NGAKHNITKNIDLRKTFESTNGDEKLI 136
NG I +NIDL + F+ N D +LI
Sbjct: 617 NGTSIYICENIDLNEPFKVLNVDSELI 643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,443
Number of Sequences: 5004
Number of extensions: 64025
Number of successful extensions: 270
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -