Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c12
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0194 + 14084828-14085025,14085116-14085788,14085855-140870... 33 0.29
05_05_0149 - 22733703-22736216 29 2.7
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290... 29 3.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.6
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 29 4.7
05_01_0361 - 2824728-2826043,2826288-2826507,2827616-2827702,282... 29 4.7
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 28 6.2
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 28 6.2
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 28 8.3
>08_02_0194 +
14084828-14085025,14085116-14085788,14085855-14087082,
14087435-14087686,14087767-14087877,14087967-14088048,
14088323-14088514
Length = 911
Score = 32.7 bits (71), Expect = 0.29
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +2
Query: 161 VIKNHLQSYDPRSPTQDFERTPIIISSKINDLTNDTENLRLISDSCTSPITSKDKDNSCE 340
+I L +YDP+ +D E+ + S + E ++SDS S + ++D+ SC
Sbjct: 645 IIPKLLSTYDPKEIDKDKEK---FMFSAFRNSEKRKELAHVLSDSQKSVLAAQDEVQSCM 701
Query: 341 TYMEAKEFSPDL--ISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKE 478
+ EA + + P +C T + QD E+ +G + KE
Sbjct: 702 QFHEADRTGAKVGYVDPTRICK--TQHTV-ELRQDCEQLVGKTPEEKE 746
>05_05_0149 - 22733703-22736216
Length = 837
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 350 EAKEFSPDLISPKNLCNGFLDSTFNDTLQDNEEPLGSSTASKETLEANKSNENKPTK 520
E EF L P+ +GF++S+ + Q+ + + S A K+T ++ ++N+ K
Sbjct: 407 ELAEFVEKLHEPEPQNSGFMNSSQESSCQEEDSEVTSQYAKKQTSDSIDGSKNEVEK 463
>10_07_0045 +
12328388-12328419,12328504-12328645,12328862-12329054,
12329224-12329320,12329404-12329528,12329616-12329734,
12331225-12331298,12331359-12331413,12331450-12331500,
12331611-12331857,12331940-12332036,12332170-12332244,
12334286-12334488,12334757-12334905,12334995-12335168,
12335276-12335401,12335493-12335623,12335743-12335818,
12335898-12336027,12336115-12336193,12336267-12336465,
12336591-12336698,12336769-12337025,12337267-12337282
Length = 984
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 287 SDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCNGFLDSTFNDTLQDNE 445
+D T+P + K K++ E + +K P++ P NL T+ QD E
Sbjct: 454 ADMITTPPSKKAKNSESEEHGVSKVSMPNIDVPSNLIRSMFGQTYKYLPQDYE 506
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
Frame = -2
Query: 198 DRGSY-DCKWFFITAD 154
DRGSY C+WFF TAD
Sbjct: 317 DRGSYFSCQWFFRTAD 332
>09_06_0244 +
21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 431 LQDNEEPLGSSTASKETLEANKSNEN 508
+QD E LG+ K+T +ANK+ EN
Sbjct: 435 IQDGSESLGADAYPKQTTKANKTIEN 460
>05_01_0361 -
2824728-2826043,2826288-2826507,2827616-2827702,
2827726-2827980,2828704-2828733
Length = 635
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 416 TFNDTLQDN--EEPLGSSTASKETLE---ANKSNENKPTKLLETNFDCNEVCDIEFNSKR 580
T + +QDN EE SS AS++ + A+ S P++ LE+N D + + SK+
Sbjct: 405 TSENAVQDNKKEEYTESSPASEQESKSHTASSSATRSPSQQLESNQDIEIMGGLRLESKK 464
Query: 581 NSMSNPDST 607
+ P+S+
Sbjct: 465 PAEQPPESS 473
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 239 SKINDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFSPDLISPKNLCN 400
S ND+ ++ + L SD C SP S + + + K++ P P+ + N
Sbjct: 35 SSDNDIADEDDEYSLPSDPCPSPSPSPKRRKKVDDEEDDKDYIPPKEGPELIRN 88
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Frame = +2
Query: 56 NGAKHNITKNIDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFERTPIII 235
+G KH+ + + + E+T + +L +L ++ S+D + TP++
Sbjct: 190 HGEKHDDSHGDQVPRLNEATGAEHELPFEFQVLELALETVCSSFDVNVSGLERRATPVLE 249
Query: 236 SSKINDLTNDTENLRLISDSCTSPITSKDK-DNSCETYMEAKEFSPDL-ISPKNLCNGFL 409
N T + + +R + T + K + E ++ E L ++ K L N +
Sbjct: 250 ELTKNVSTRNLDRVRTLKSDLTRLLAHVQKVRDEIEHLLDDNEDMAHLYLTRKQLQNQQV 309
Query: 410 DSTFNDTLQDNEEPLGSS 463
++ + ++ P G+S
Sbjct: 310 EALISSAASNSIVPGGTS 327
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -2
Query: 681 IEGERGSYSKILNTGIHCSLLSLTSVESGFDMLFLLLLNSISQTSLQSKLVSNSLVGLFS 502
++ E+ ++ HCS + + ++G ++ L NS +T + NS+ G FS
Sbjct: 245 VQDEQKDHAGFQTAYRHCSDWNRCTNDTG--IVGNYLANSSGETC---NVGENSITGRFS 299
Query: 501 LDLLASRVSLEAVDEP 454
++L S V + V EP
Sbjct: 300 QEILCSEVPMSRVQEP 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,786,082
Number of Sequences: 37544
Number of extensions: 323548
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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