Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c12
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.40 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 245 INDLTNDTENLRLISDSCTSPITSKDKDNSCETYMEAKEFS 367
           I  LT DT+  RL +    S +   +KD+     +  KEFS
Sbjct: 239 IKKLTEDTQERRLSNKGSISKLQFHNKDDDLILTLGKKEFS 279


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
 Frame = +2

Query: 86  IDLRKTFESTNGDEKLIHNNPILSAVIKNHLQSYDPRSPTQDFER-TPIIISSKINDLTN 262
           +D R    S +    L+ + P       N  +S +     QD E+   + I S  +   N
Sbjct: 33  VDRRSPSSSRSPSPSLLTSQPHQD---HNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVN 89

Query: 263 DTENLRLISDSCTSPI---TSKDKDNSCETYMEAKEFSPDLISPKNLCNGFLDSTFNDTL 433
           D +    I D   + +    +K+K N C  + E K     L   K L N  +DS +   L
Sbjct: 90  DKKEENFIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDS-YKSNL 148

Query: 434 QDNEEPLGSSTASKETLEANKSNENKPTKLLE 529
           + ++     S   +  LE N +   +  +LLE
Sbjct: 149 KCDKCSTYQSNGEEVCLE-NCTGYQQYLRLLE 179


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 462 QLPPKKPWKP 491
           +LPP K WKP
Sbjct: 102 RLPPDKVWKP 111


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 462 QLPPKKPWKPTSLM 503
           ++PP + WKP  LM
Sbjct: 99  RIPPHRLWKPDVLM 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,202
Number of Sequences: 438
Number of extensions: 4325
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)