Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c10
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 33 0.034
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 31 0.14
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 0.42
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 29 0.73
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 29 0.73
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.96
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 2.2
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 27 2.9
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.9
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 5.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 6.8
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 6.8
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 9.0
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.0
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 25 9.0
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 33.5 bits (73), Expect = 0.034
Identities = 29/123 (23%), Positives = 56/123 (45%)
Frame = +2
Query: 296 SNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALL 475
S +SL + + +E + MK +L +L E+L +R+Q+L+ + +T + L
Sbjct: 565 SGQSLLDIPIEQEEQERDMKIQL----DLLEELQSRVQKLVPERQTTLQALQ----QKCL 616
Query: 476 QTAAAESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKMSELLRNSNQNA 655
Q +ES Q+ L + L+ F+P+R ++H + + + +RN Q
Sbjct: 617 QDDISESLMQNSKRKDSALDTNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRNVTQKL 676
Query: 656 YGN 664
N
Sbjct: 677 KQN 679
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 31.5 bits (68), Expect = 0.14
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 143 QSDYPSVMGLLAHLNSNELKEMLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFN 322
+S + + + HL+S +++EM+ + KF+ KD + + ++ E +I++ +
Sbjct: 500 RSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTI--- 556
Query: 323 LGKEPELERMKAELQEKSELGEQLCTRIQEL-LDDYKT 433
EP + MK + +KS++ QL + +L L+D T
Sbjct: 557 --SEPNV-MMKLKRGDKSKIEAQLAECMSQLELEDTNT 591
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.9 bits (64), Expect = 0.42
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Frame = +2
Query: 320 NLGKEPELERMKAE--LQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAE 493
NL E ++K E L E++ L E L T +L SAG D ++ + E
Sbjct: 591 NLESELNSSKIKNESLLNERNLLKEMLATSRSSILSH--NSSAGNIDDKMKSI-DESTRE 647
Query: 494 SEEQSDNIARDFLSGKMGVDK----FLEDFEPIRKQMHIRKYKAEKMSELLRNSNQN 652
E+ + + + + + K L + E IRK++ KY+ + ++ L N+N +
Sbjct: 648 LEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANND 704
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/57 (26%), Positives = 35/57 (61%)
Frame = +2
Query: 344 ERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 514
E+ K + ++E E++ R+Q+ LD + K++ SP++ +A + +ES+ +S++
Sbjct: 520 EKKKGRVLSETEQAEKI-RRLQQQLDRFAGKTSPTSPESNNA-ANVSDSESDNESES 574
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.73
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 641 CFSTILTFSRLCTSLYAFV--YGWVQNLLEIYQHPF 540
C IL +C++ Y+ + YG++ N++ +Y H F
Sbjct: 91 CLRAILNIVTICSNSYSILVNYGFILNMVHMYVHVF 126
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 515 IARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAE 616
IA +F KM DK +ED PI+K H+ ++AE
Sbjct: 500 IAYEF-KNKMAYDKSIEDNAPIKKFEHLPFFEAE 532
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.2
Identities = 30/142 (21%), Positives = 60/142 (42%)
Frame = +2
Query: 185 NSNELKEMLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAEL 364
+S+E++E L + + +LKD + ++ EK FIA + + + + L+ + A
Sbjct: 84 DSSEMEEYLLGRRRLDDLLKDKIEDQNNSLEKTEFIALQNANSLQDTQAKLRLDPLLAIK 143
Query: 365 QEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIARDFLSGKM 544
Q++ + + L + + LD + D H Q S E+SDN +
Sbjct: 144 QQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQD---RSRERSDNEQHSSDKREH 200
Query: 545 GVDKFLEDFEPIRKQMHIRKYK 610
+ D R++ H +Y+
Sbjct: 201 SRRSYRNDRNNWRERTHNDRYR 222
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 2.9
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 200 KEMLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFNLGK-EPELERMKAELQEKS 376
K + + D K + KD+ +VK+ +EK + + + EPE+++ +EK
Sbjct: 110 KRIKSPDVKDFKLPKDILKVKE-KSEKPLETSQKVEIETVETKPGEPEVKQETNLQKEKK 168
Query: 377 ELGEQLCTRIQELLDDYKTKSAGISPDTTH---ALLQTAAAESEEQSD 511
E +L ++ +++ + ++ S ISP T +Q E +E+S+
Sbjct: 169 ESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKSE 216
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 338 ELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 439
+LE +K +E+ + E L RIQ L TKS
Sbjct: 435 QLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKS 468
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.9
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 10/141 (7%)
Frame = +2
Query: 251 KQVKDWDTEKEMFIASNRSLAE---FNLGKEPELERMKAELQEKSELGEQLCTRIQELLD 421
K+ KD++ KE + SLAE N E ER++ L ++ L L
Sbjct: 219 KKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQERLEKLLVSSNKTVSTLRQTENSLRA 278
Query: 422 DYKTKSAGISPDTTHALLQTAAAESEEQSDNIARDFLSGKMGVDKFLED-------FEPI 580
+ KT + A+ + + EE N+A ++ + DK +ED F+ +
Sbjct: 279 ECKTLQEKLEKC---AINEEDSKLLEELKHNVA-NYSDAIVHKDKLIEDLSTRISEFDNL 334
Query: 581 RKQMHIRKYKAEKMSELLRNS 643
+ + K EK+ +LLRN+
Sbjct: 335 KSERDTLSIKNEKLEKLLRNT 355
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 212 NDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFNLGKEPELERM 352
+DD + + VL + ++ W TE+ + I +S ++F EL R+
Sbjct: 216 SDDVEEDRVLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRI 262
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 6.8
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +2
Query: 401 RIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIARDFLSGKMGVDKFLEDFEPI 580
+I LL G P TT +LQ + S Q+ ARD + M KF+ + +
Sbjct: 1310 KIYRLLTTKLWDIQGQFPLTTSLVLQLSQLISGSQAGPFARDTIHALMDEPKFMANGSIL 1369
Query: 581 RKQM-HIRKYKAEKMSELLRNSNQNAYGN 664
Q+ H ++ E L R + YGN
Sbjct: 1370 SNQVNHHLRFVIE---YLRREGLLDVYGN 1395
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 149 DYPSVMGLLAHLNSNELKEMLNDDAKF 229
DY +V G+ H +S LKE N DA +
Sbjct: 242 DYGNVYGVPEHTSSLSLKETNNSDAGY 268
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 329 KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGI 448
++ LER KAE+++ SE E ++ +L ++ K K + I
Sbjct: 140 QKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKI 179
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/123 (15%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 314 EFNLGKEPELERMKAELQEKSELG-EQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAA 490
+F+L + ++ + K+ L + L ++E++ + + ++T L + +
Sbjct: 243 QFSLPEPRRPQKPMRTTERKASLNTKDLYQEVEEVMARLRGRMPNSGRESTIFLPRKLSG 302
Query: 491 ESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKMSELLRNSNQNAYGNGA 670
EE+ +D +S ++ + F + Q+H++ ++ K + N N +++ + +
Sbjct: 303 LREEEE----QDEISVEVSQEDSSNAFPSLSDQLHLKSLQSMKRVTSIFNDNDDSFPSAS 358
Query: 671 TKP 679
+ P
Sbjct: 359 SSP 361
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 9.0
Identities = 21/71 (29%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Frame = +2
Query: 176 AHLN---SNELKEMLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRSLAEFNLGKEPELE 346
AHL +N+ KE+ + +A+ E++ K+++ +KD + + + +S+ AE + KE + E
Sbjct: 1433 AHLKQELTNKNKELTSKNAENEAMQKEIESLKDSNHQLQESASSD---AE-QITKE-QFE 1487
Query: 347 RMKAELQEKSE 379
++K+E +E++E
Sbjct: 1488 QLKSE-KERTE 1497
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 206 MLNDDAKFESVLKDVKQVKDWDTEKEMFIASNRS---LAEFNLGKEPEL 343
+++DD ++ L D+K + W T I SN L GKE +L
Sbjct: 202 LVSDDKVIDASLPDIKNLHYWTTRLSPLINSNTDAIVLVANRWGKENDL 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,979
Number of Sequences: 5004
Number of extensions: 46060
Number of successful extensions: 152
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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