Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c10
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            28   0.083
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   7.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 659 HMHSDCCFSTILTFSRLCTSLYAFVYGWVQNLLEIYQHPFFQI 531
           H   D      +TF  + T        W+++ +E+Y H FFQ+
Sbjct: 29  HFELDYMLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQV 71


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 454 RYNSCTSANSSSRIRRTVR 510
           R NSC   N+SSR+   +R
Sbjct: 371 RQNSCNIYNASSRMENNLR 389


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 601 EVQSRENVRIVEKQQSECI 657
           E+ +R+N+ I  K  SECI
Sbjct: 101 EMANRKNISIDVKMLSECI 119


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 656 MHSDCCFSTILTFSRLCTSLYAFVYGWV 573
           M   C F     FS L T +Y    GW+
Sbjct: 139 MAERCNFKAYCLFSFLNTIVYCVPAGWI 166


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 682 VWFCSTITICILIAVSQQF*HFLGFV 605
           +W C    + ILI +  QF    GF+
Sbjct: 375 IWSCLFFFMLILIGLDSQFCTVEGFI 400


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 682 VWFCSTITICILIAVSQQF*HFLGFV 605
           +W C    + ILI +  QF    GF+
Sbjct: 428 IWSCLFFFMLILIGLDSQFCTVEGFI 453


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 345 SNSGSFPKLNSASDLLLAMNISFSVSQ 265
           S   S PKLN ++ L+     +F VSQ
Sbjct: 362 STGSSIPKLNLSTALMSQPPPNFGVSQ 388


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 488 AESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYK 610
           A +EE+     RD  SGK+G  +    +   R  +  + YK
Sbjct: 590 AYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYK 630


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,957
Number of Sequences: 438
Number of extensions: 3184
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)