Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte29c07
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 30 0.39
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 29 0.52
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.69
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 29 0.91
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 28 1.2
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 28 1.6
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 2.1
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 26 6.4
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 26 6.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 6.4
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 6.4
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.4
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 6.4
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 25 8.5
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 620 ETFKKMKNKYKALVKIQATKLYDEYTKKLDAEKER 724
E F+ ++ KYKAL + K ++ ++ DAEK+R
Sbjct: 73 ERFEMIRQKYKALTADEIQKYKNKLQEQFDAEKKR 107
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 29.5 bits (63), Expect = 0.52
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 342 LLTLEKESLKHITWKWREKRIGYSMIMTSNG 434
+LT K TW W+ K +G ++ TS+G
Sbjct: 414 VLTAHKNDSSARTWNWKSKTLGQHVLPTSDG 444
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 0.69
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +2
Query: 329 SFEGIAYFGERIVEAHHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQ 508
SF+G ERI+E +++ K I ++ + + ID K + L E+ S +++ +T
Sbjct: 737 SFQGSTNSKERIIEYLLDKLDLRKKEIAAESTLWSNDGIDDKLRDLREQMSRQSSQPSTV 796
Query: 509 A--IRQAFKEFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKMK 640
+ ++ K+F + L R + +A+ + +E+ K MK
Sbjct: 797 STILQIPDKKFHRPFPRHLHR---YVGRSASESLTSEKDESIKSMK 839
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 28.7 bits (61), Expect = 0.91
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = +2
Query: 329 SFEGIAYFGERIVEAHHMEMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQ 508
S +GI+ R+ + M + EKD I+ D K D KC K+ E + N +T
Sbjct: 1007 STKGISEVESRVDKIQVMAWDHEKDEIVTLIDSKQDSLFDLKC-KMQEGWFIHSPNPSTD 1065
Query: 509 AIRQAFKEFSVVYMTSLTRIESLMSHAAN 595
K S + IE ++++A+N
Sbjct: 1066 V---NIKMGSFTMLCHKQPIEEILNYASN 1091
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 445 NCLFPFDVIIMEYPILFSLHFHVMCFNDSFSKVSNTFKTELRKMTFLYWFQNC 287
NC F D + YP +F +H ND F + T+ + R + W C
Sbjct: 130 NCGFLIDEKMRRYPGIFQIHPKDYTMNDLFPQSFPTWISVYRNVPEKAWANRC 182
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 530 EFSVVYMTSLTRIESLMSHAANIEVMRTSEETFKKMKNKYKALVKIQATKLYDEYTKKLD 709
E V +MTSL+++ SLM + E+ + ++ + L+K Y E ++L
Sbjct: 246 EAEVAFMTSLSQLTSLMEDMIKYTLNSLMEQNYH--RDHWDQLLKPWKCMTYSEAIEELS 303
Query: 710 AEKERLK 730
A K+ K
Sbjct: 304 AVKKTWK 310
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 575 LMSHAANIEVMRTSEETFKKMKNKYKALVKIQATKLYDEYTKKLDAEKE 721
+ +H + RT ++ K ++N K L + L+D YT+ ++ KE
Sbjct: 167 IQNHVVQAQYYRTEKQYDKYLENN-KFLTHLNNEVLHDNYTRNIEKLKE 214
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 365 VEAHHMEMEREKDRILHDNDVKWKEAID--AKCKKLWEE 475
+ AH E E ++ R++H + E ID AK + LW++
Sbjct: 47 IRAHFQEEEFQQIRLMHKRMLLRDEKIDELAKLEHLWQK 85
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 200 LKVLAGLEPRLKGGGSDWYIPPEDLLKGRAVLKPIQKCHLAQLSFEGIA 346
L++++G+E K G I PE++L R KPI + +L G+A
Sbjct: 132 LQIISGIEHIHKHGFMHRDIKPENILVKRISPKPISSRYSIKLGDFGLA 180
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 464 LWEEC--STEAANRNTQAIRQAFKEFSVVYMTSLTR 565
LW C + E +N + + F+E S+VY +T+
Sbjct: 621 LWTACCVTDEGKEKNIKIAVEIFREISIVYPNPITK 656
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +2
Query: 383 EMEREKDRILHDNDVKWKEAIDAKCKKLWEECSTEAANRNTQAI----RQAFKEFSVVYM 550
E+ EK+ L + + ++ DA + L + ++ +N I KE + + +
Sbjct: 992 ELLEEKENALIMMEEEMRQVNDANTELLRVNATLKSQLKNYDMIIVEQTSQLKEKNRI-I 1050
Query: 551 TSLTRIESLMSHAANIEVMRTSEETFKK 634
SLT+ +++ A++IE R SEE ++
Sbjct: 1051 ASLTKATKILNSASSIEQSRNSEEKSRR 1078
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 101 CYLKRQQVPTQSVMIDKMSKPLAEVYFKSMTPKLKVLAGLEPRL 232
C++ Q+V Q +I + S+P+ + F S + V L+ ++
Sbjct: 172 CFVGYQEVAHQETVIGENSEPIVTIEFDSFNSNVPVTLKLQRQI 215
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 617 EETFKKMKNKYKALVKIQATKLYDEY 694
E+ FK++ Y+ L Q KLYD+Y
Sbjct: 42 EKKFKEISLAYEVLSDPQRRKLYDQY 67
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 458 KKLWEECSTEAANRNTQAIRQAFKEFSVVY-MTSLTRIESLMSHAANIEVMRTSEETFKK 634
K+LW+ + +R + ++Q + ++VY T+ ++ + + N E+ +E +
Sbjct: 341 KRLWQNAKADEIDRLLEVVKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTV 400
Query: 635 MK 640
+K
Sbjct: 401 VK 402
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 248 DWYIPPEDLLKGRAVLKPIQKCHLAQLSFEGIAYFGE 358
DW PP+D + ++KP Q+ + +E +FGE
Sbjct: 197 DWMNPPDDDNRPSWLIKPFQRIIASDCIYE--THFGE 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,475
Number of Sequences: 5004
Number of extensions: 63962
Number of successful extensions: 213
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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