Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c07
         (735 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    26   1.4  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   2.4  

>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 596 IEVMRTSEETFKKMKNKYKALVKIQATKLYDEYTKKLD 709
           I+  R S+++ + +K    +L+K +A KLYD+   K D
Sbjct: 104 IKSYRASKQSNRTIKQN--SLIKTRARKLYDQVLTKFD 139


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +2

Query: 431 WKEAIDAKCKKLW-EECSTEAANRNTQAIRQAFKEFSVV 544
           W E++  +C+K W   C     NR   A R    + + V
Sbjct: 778 WAESLKFECRKQWLRRCHRPLVNRVISAFRSTSHDAACV 816



 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 200 LKVLAGLEPRLKGGGSDWYIPPE 268
           L   AGLE  L   G D ++ PE
Sbjct: 148 LAAFAGLEMVLMNNGQDTFVTPE 170


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,830
Number of Sequences: 2352
Number of extensions: 15320
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)