Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c06
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.6  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    26   5.6  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   7.4  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.7  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   9.7  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 324 CSLNLCEQACEVQGESMWCS 383
           C+  +C+QA E QG S W S
Sbjct: 88  CNSWMCQQAAEEQGNSNWDS 107


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 120 CRRGSRVPGQQDRGEVTQRPRGPTAGASRLRVA 22
           C  G R+ G Q+ G +  R   PTA     R+A
Sbjct: 41  CDHGGRLFGLQEPGYIYSRMMNPTADVFEKRIA 73


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 605 WKRFCNSQRYPWDT 564
           WKR+C  + Y W+T
Sbjct: 336 WKRWCRVKEYSWNT 349


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 370 LSPCTSHACSHRFRLHGSIDFGIHRPAT 287
           LSPC+   CS R RLH      +H P+T
Sbjct: 61  LSPCSFTICSLRARLH-----SLHGPST 83


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 172 SITSMVSVRCGSSALYPLSSW*QSTRAAG*RRSNT 68
           S +  +SV+ G     P+ SW  +   +  R SNT
Sbjct: 679 STSKRISVQLGKKQARPVDSWGSTPNTSSNRNSNT 713


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 238 TPTYNA*GCTAAIHTNTSLDGVFR 309
           +P+YN       IHTNTS +G  R
Sbjct: 167 SPSYNCPTTLRKIHTNTSSNGTSR 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,996
Number of Sequences: 5004
Number of extensions: 61857
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)