Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte29c03
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   2.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   4.4  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   5.8  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -3

Query: 363 IDITHKSLPIATRTKYRNQKIRRPPM 286
           + +TH S P++T + +++ + R PP+
Sbjct: 44  VPLTHNSYPLSTPSSFQHGQTRLPPI 69


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 307 LVSVFCSCCYG*GFMCDINVRYNLSYE*CNTIPLLMIDTVCLV 435
           L  VF  CC+G  +       +  S    NT+PL+++  VC V
Sbjct: 411 LAEVFFHCCHGQSYNLFHRPTFFESLN-NNTVPLVVVYAVCAV 452


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 10  ISTFVSLH--SSEISEFVEFYWSCFL*CFV 93
           +S  V+LH  +   S    F WSC L CFV
Sbjct: 76  LSVCVALHWIAFSCSVMCHFAWSCALPCFV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,193
Number of Sequences: 5004
Number of extensions: 35873
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)